Strain Fitness in Pseudomonas putida KT2440 around PP_0893

Experiment: pH 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5
1,034,186	+		PP_0892	0.19	-1.5
1,034,186	+		PP_0892	0.19	+1.6
1,034,187	-		PP_0892	0.19	-2.4
1,034,244	-		PP_0892	0.24	-2.2
1,034,255	+		PP_0892	0.25	-3.0
1,034,255	+		PP_0892	0.25	-2.6
1,034,256	-		PP_0892	0.25	-0.4
1,034,257	+		PP_0892	0.25	-3.2
1,034,258	-		PP_0892	0.25	-0.3
1,034,295	-		PP_0892	0.29	-1.2
1,034,574	-		PP_0892	0.53	-1.7
1,034,616	+		PP_0892	0.56	+2.5
1,034,616	+		PP_0892	0.56	+2.4
1,034,617	-		PP_0892	0.56	-0.2
1,034,769	+		PP_0892	0.70	+0.2
1,034,789	+		PP_0892	0.71	-0.1
1,034,790	-		PP_0892	0.71	+0.4
1,034,790	-		PP_0892	0.71	-1.4
1,034,790	-		PP_0892	0.71	-0.8
1,034,790	-		PP_0892	0.71	+0.4
1,034,790	-		PP_0892	0.71	+3.0
1,034,792	+		PP_0892	0.72	-0.4
1,034,793	-		PP_0892	0.72	-0.7
1,034,868	+		PP_0892	0.78	-2.7
1,034,868	+		PP_0892	0.78	+0.1
1,034,869	-		PP_0892	0.78	-0.2
1,035,143	+				-0.6
1,035,144	-				-0.2
1,035,154	-				-0.7
1,035,209	+				+1.4
1,035,210	-				+0.6
1,035,210	-				+1.5
1,035,221	+				+0.3
1,035,383	+		PP_0893	0.37	-2.5
1,035,384	-		PP_0893	0.37	-3.8
1,035,413	+		PP_0893	0.42	-3.5
1,035,414	-		PP_0893	0.43	-1.4
1,035,414	-		PP_0893	0.43	-0.4
1,035,724	+				+2.2
1,035,742	+				+0.5
1,035,743	-				-0.4
1,035,743	-				-4.6
1,035,816	+				-0.6
1,035,816	+				-0.8
1,035,817	-				+0.7
1,035,817	-				+0.5
1,035,819	+				-0.6
1,035,819	+				-0.2
1,035,819	+				-1.8
1,035,819	+				-2.4
1,035,819	+				-1.5
1,035,820	-				-1.8
1,035,820	-				-0.4
1,035,853	+				-0.8
1,035,853	+		PP_0894	0.18	+0.2
1,035,855	+		PP_0894	0.18	+3.5
1,035,855	+		PP_0894	0.18	+1.6
1,035,855	+		PP_0894	0.18	+1.0
1,035,855	+		PP_0894	0.18	-2.1
1,035,856	-		PP_0894	0.19	+0.2
1,035,856	-		PP_0894	0.19	-0.7
1,035,856	-		PP_0894	0.19	-0.5
1,035,856	-		PP_0894	0.19	-0.1
1,035,882	+		PP_0894	0.25	-1.1
1,035,882	+		PP_0894	0.25	+0.8
1,035,882	+		PP_0894	0.25	+0.2
1,035,882	+		PP_0894	0.25	+0.2
1,035,882	+		PP_0894	0.25	+0.1
1,035,882	+		PP_0894	0.25	+1.2
1,035,882	+		PP_0894	0.25	-2.7
1,035,883	-		PP_0894	0.25	+0.0
1,035,883	-		PP_0894	0.25	-2.7
1,035,883	-		PP_0894	0.25	+0.0
1,035,883	-		PP_0894	0.25	-3.3
1,035,928	-		PP_0894	0.37	+0.2
1,035,928	-		PP_0894	0.37	+0.6
1,036,149	+				-0.7
1,036,150	-				-0.2
1,036,150	-				+1.8
1,036,153	-				+1.9
1,036,153	-				+1.3
1,036,153	-				+0.5
1,036,161	-				+1.5
1,036,200	-				+0.2
1,036,200	-				+0.4
1,036,219	-				-0.2
1,036,219	-				-1.4
1,036,219	-				+0.5
1,036,231	-				+0.2
1,036,303	+				+0.4
1,036,303	+				-0.4
1,036,303	+				+1.1
1,036,335	+				+1.5
1,036,336	-				-2.1
1,036,336	-				-1.7
1,036,364	+		PP_0895	0.12	-1.1
1,036,365	-		PP_0895	0.12	+0.5
1,036,392	+		PP_0895	0.16	-0.8
1,036,392	+		PP_0895	0.16	-2.8
1,036,392	+		PP_0895	0.16	-3.6
1,036,392	+		PP_0895	0.16	-0.9
1,036,423	-		PP_0895	0.21	-2.8
1,036,434	+		PP_0895	0.23	-0.4
1,036,434	+		PP_0895	0.23	-0.5
1,036,435	-		PP_0895	0.24	+1.5
1,036,435	-		PP_0895	0.24	-0.2
1,036,435	-		PP_0895	0.24	-0.1
1,036,499	+		PP_0895	0.34	-0.6
1,036,578	+		PP_0895	0.48	-0.9
1,036,578	+		PP_0895	0.48	-0.0
1,036,579	-		PP_0895	0.48	+0.1
1,036,579	-		PP_0895	0.48	+1.8
1,036,579	-		PP_0895	0.48	-1.0
1,036,582	-		PP_0895	0.48	-0.5
1,036,582	-		PP_0895	0.48	-0.4
1,036,612	-		PP_0895	0.53	-0.5
1,036,660	-				+0.2
1,036,660	-		PP_0895	0.62	-0.4
1,036,660	-		PP_0895	0.62	+3.2
1,036,687	-		PP_0895	0.66	+0.7