Strain Fitness in Pseudomonas putida KT2440 around PP_0858

Experiment: pH 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0857 and PP_0858 are separated by 151 nucleotidesPP_0858 and PP_0859 overlap by 13 nucleotidesPP_0859 and PP_0860 are separated by 124 nucleotides PP_0857: PP_0857 - GTPase Der, at 991,379 to 992,842 _0857 PP_0858: PP_0858 - putative methionine/glutamine aminotransferase, at 992,994 to 994,142 _0858 PP_0859: PP_0859 - putative ketoglutaramate omega-amidase, at 994,130 to 994,921 _0859 PP_0860: PP_0860 - putative Sulfite reductase, flavoprotein component, at 995,046 to 997,595 _0860 Position (kb) 992 993 994 995Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 992.908 kb on + strandat 992.973 kb on + strandat 992.973 kb on + strandat 992.973 kb on + strandat 992.973 kb on + strandat 992.973 kb on + strandat 992.973 kb on + strandat 992.974 kb on - strandat 992.974 kb on - strandat 992.974 kb on - strandat 993.163 kb on - strand, within PP_0858at 993.225 kb on + strand, within PP_0858at 993.225 kb on + strand, within PP_0858at 993.226 kb on - strand, within PP_0858at 993.226 kb on - strand, within PP_0858at 993.226 kb on - strand, within PP_0858at 993.226 kb on - strand, within PP_0858at 993.260 kb on + strand, within PP_0858at 993.260 kb on + strand, within PP_0858at 993.261 kb on - strand, within PP_0858at 993.284 kb on + strand, within PP_0858at 993.285 kb on - strand, within PP_0858at 993.357 kb on + strand, within PP_0858at 993.358 kb on - strand, within PP_0858at 993.395 kb on - strand, within PP_0858at 993.395 kb on - strand, within PP_0858at 993.549 kb on - strand, within PP_0858at 993.549 kb on - strand, within PP_0858at 993.563 kb on + strand, within PP_0858at 993.567 kb on + strand, within PP_0858at 993.567 kb on + strand, within PP_0858at 993.568 kb on - strand, within PP_0858at 993.568 kb on - strand, within PP_0858at 993.588 kb on + strand, within PP_0858at 993.588 kb on + strand, within PP_0858at 993.589 kb on - strand, within PP_0858at 993.589 kb on - strand, within PP_0858at 993.603 kb on + strand, within PP_0858at 993.603 kb on + strand, within PP_0858at 993.614 kb on - strand, within PP_0858at 993.649 kb on - strand, within PP_0858at 993.649 kb on - strand, within PP_0858at 993.649 kb on - strand, within PP_0858at 993.649 kb on - strand, within PP_0858at 993.649 kb on - strand, within PP_0858at 993.687 kb on + strand, within PP_0858at 993.687 kb on + strand, within PP_0858at 993.688 kb on - strand, within PP_0858at 993.765 kb on + strand, within PP_0858at 993.766 kb on - strand, within PP_0858at 993.766 kb on - strand, within PP_0858at 993.836 kb on + strand, within PP_0858at 993.836 kb on + strand, within PP_0858at 993.837 kb on - strand, within PP_0858at 993.837 kb on - strand, within PP_0858at 993.859 kb on - strand, within PP_0858at 993.914 kb on + strand, within PP_0858at 993.933 kb on + strand, within PP_0858at 993.933 kb on + strand, within PP_0858at 993.934 kb on - strandat 993.934 kb on - strand, within PP_0858at 993.952 kb on - strand, within PP_0858at 994.044 kb on + strandat 994.045 kb on - strandat 994.076 kb on - strandat 994.129 kb on + strandat 994.145 kb on - strandat 994.145 kb on - strandat 994.211 kb on + strand, within PP_0859at 994.211 kb on + strand, within PP_0859at 994.280 kb on - strand, within PP_0859at 994.338 kb on - strand, within PP_0859at 994.466 kb on + strand, within PP_0859at 994.467 kb on - strand, within PP_0859at 994.467 kb on - strand, within PP_0859at 994.511 kb on + strand, within PP_0859at 994.511 kb on + strand, within PP_0859at 994.578 kb on - strand, within PP_0859at 994.578 kb on - strand, within PP_0859at 994.634 kb on + strand, within PP_0859at 994.635 kb on - strand, within PP_0859at 994.712 kb on + strand, within PP_0859at 994.712 kb on + strand, within PP_0859at 994.713 kb on - strand, within PP_0859at 994.760 kb on + strand, within PP_0859at 994.760 kb on + strand, within PP_0859at 994.761 kb on - strand, within PP_0859at 994.843 kb on - strandat 994.843 kb on - strandat 994.903 kb on + strandat 994.904 kb on - strandat 995.036 kb on + strandat 995.036 kb on + strandat 995.050 kb on + strandat 995.050 kb on + strandat 995.050 kb on + strandat 995.050 kb on + strandat 995.050 kb on + strandat 995.051 kb on - strandat 995.051 kb on - strandat 995.091 kb on + strandat 995.092 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pH 5
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992,908 + -4.2
992,973 + -0.9
992,973 + -0.4
992,973 + +0.1
992,973 + +1.3
992,973 + +0.1
992,973 + -1.0
992,974 - -3.0
992,974 - +1.1
992,974 - -1.5
993,163 - PP_0858 0.15 +1.1
993,225 + PP_0858 0.20 -1.8
993,225 + PP_0858 0.20 -2.9
993,226 - PP_0858 0.20 -3.2
993,226 - PP_0858 0.20 +1.7
993,226 - PP_0858 0.20 +0.1
993,226 - PP_0858 0.20 -1.9
993,260 + PP_0858 0.23 +1.1
993,260 + PP_0858 0.23 -4.2
993,261 - PP_0858 0.23 -1.8
993,284 + PP_0858 0.25 -1.6
993,285 - PP_0858 0.25 -2.0
993,357 + PP_0858 0.32 -0.0
993,358 - PP_0858 0.32 -0.9
993,395 - PP_0858 0.35 -1.0
993,395 - PP_0858 0.35 -0.7
993,549 - PP_0858 0.48 +0.1
993,549 - PP_0858 0.48 -1.6
993,563 + PP_0858 0.50 -0.9
993,567 + PP_0858 0.50 -1.4
993,567 + PP_0858 0.50 +1.7
993,568 - PP_0858 0.50 +0.1
993,568 - PP_0858 0.50 +2.7
993,588 + PP_0858 0.52 -0.3
993,588 + PP_0858 0.52 -0.1
993,589 - PP_0858 0.52 +1.1
993,589 - PP_0858 0.52 +1.9
993,603 + PP_0858 0.53 -3.8
993,603 + PP_0858 0.53 -1.4
993,614 - PP_0858 0.54 +0.4
993,649 - PP_0858 0.57 +0.1
993,649 - PP_0858 0.57 +0.4
993,649 - PP_0858 0.57 -1.4
993,649 - PP_0858 0.57 -3.4
993,649 - PP_0858 0.57 +1.1
993,687 + PP_0858 0.60 -3.3
993,687 + PP_0858 0.60 -0.9
993,688 - PP_0858 0.60 -0.3
993,765 + PP_0858 0.67 -1.6
993,766 - PP_0858 0.67 +0.1
993,766 - PP_0858 0.67 +0.4
993,836 + PP_0858 0.73 -0.7
993,836 + PP_0858 0.73 -1.0
993,837 - PP_0858 0.73 +3.6
993,837 - PP_0858 0.73 +1.6
993,859 - PP_0858 0.75 -0.7
993,914 + PP_0858 0.80 -0.9
993,933 + PP_0858 0.82 -1.4
993,933 + PP_0858 0.82 +4.1
993,934 - +0.1
993,934 - PP_0858 0.82 -0.6
993,952 - PP_0858 0.83 -2.0
994,044 + -0.4
994,045 - -0.9
994,076 - -1.3
994,129 + -0.1
994,145 - +1.1
994,145 - -0.3
994,211 + PP_0859 0.10 -2.2
994,211 + PP_0859 0.10 +0.5
994,280 - PP_0859 0.19 -1.2
994,338 - PP_0859 0.26 +3.3
994,466 + PP_0859 0.42 -1.4
994,467 - PP_0859 0.43 -0.7
994,467 - PP_0859 0.43 -0.5
994,511 + PP_0859 0.48 -0.0
994,511 + PP_0859 0.48 +0.1
994,578 - PP_0859 0.57 -0.1
994,578 - PP_0859 0.57 -1.7
994,634 + PP_0859 0.64 +0.0
994,635 - PP_0859 0.64 -0.1
994,712 + PP_0859 0.73 -0.9
994,712 + PP_0859 0.73 +0.8
994,713 - PP_0859 0.74 -1.7
994,760 + PP_0859 0.80 +0.1
994,760 + PP_0859 0.80 +3.3
994,761 - PP_0859 0.80 +0.5
994,843 - -0.3
994,843 - -1.3
994,903 + +2.0
994,904 - +0.2
995,036 + +0.1
995,036 + +0.6
995,050 + +1.0
995,050 + -2.9
995,050 + -3.4
995,050 + +1.0
995,050 + -1.5
995,051 - -0.4
995,051 - +0.9
995,091 + +0.8
995,092 - -0.8

Or see this region's nucleotide sequence