Strain Fitness in Pseudomonas putida KT2440 around PP_0798

Experiment: pH 5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0796 and PP_0797 are separated by 72 nucleotidesPP_0797 and PP_0798 overlap by 4 nucleotidesPP_0798 and PP_0799 are separated by 198 nucleotides PP_0796: PP_0796 - conserved protein of unknown function, at 915,180 to 915,467 _0796 PP_0797: PP_0797 - conserved protein of unknown function, at 915,540 to 916,079 _0797 PP_0798: PP_0798 - GGDEF domain protein, at 916,076 to 917,566 _0798 PP_0799: PP_0799 - histidine-specific outer membrane porin D, at 917,765 to 919,099 _0799 Position (kb) 916 917 918Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 915.097 kb on + strandat 915.098 kb on - strandat 915.213 kb on + strand, within PP_0796at 915.214 kb on - strand, within PP_0796at 915.214 kb on - strand, within PP_0796at 915.214 kb on - strand, within PP_0796at 915.311 kb on - strand, within PP_0796at 915.311 kb on - strand, within PP_0796at 915.347 kb on - strand, within PP_0796at 915.347 kb on - strand, within PP_0796at 915.378 kb on + strand, within PP_0796at 915.379 kb on - strand, within PP_0796at 915.379 kb on - strand, within PP_0796at 915.379 kb on - strand, within PP_0796at 915.436 kb on + strand, within PP_0796at 915.580 kb on - strandat 915.634 kb on + strand, within PP_0797at 915.654 kb on + strand, within PP_0797at 915.655 kb on - strand, within PP_0797at 915.655 kb on - strand, within PP_0797at 915.813 kb on - strand, within PP_0797at 915.933 kb on + strand, within PP_0797at 915.965 kb on - strand, within PP_0797at 915.990 kb on + strand, within PP_0797at 915.990 kb on + strand, within PP_0797at 915.990 kb on + strand, within PP_0797at 915.991 kb on - strand, within PP_0797at 915.991 kb on - strand, within PP_0797at 915.991 kb on - strand, within PP_0797at 915.991 kb on - strand, within PP_0797at 916.077 kb on + strandat 916.307 kb on + strand, within PP_0798at 916.307 kb on + strand, within PP_0798at 916.329 kb on + strand, within PP_0798at 916.478 kb on - strand, within PP_0798at 916.483 kb on + strand, within PP_0798at 916.483 kb on + strand, within PP_0798at 916.484 kb on - strand, within PP_0798at 916.731 kb on - strand, within PP_0798at 916.813 kb on + strand, within PP_0798at 916.813 kb on + strand, within PP_0798at 916.860 kb on + strand, within PP_0798at 916.861 kb on - strand, within PP_0798at 916.861 kb on - strand, within PP_0798at 916.863 kb on + strand, within PP_0798at 916.863 kb on + strand, within PP_0798at 916.863 kb on + strandat 916.863 kb on + strand, within PP_0798at 916.863 kb on + strand, within PP_0798at 916.863 kb on + strand, within PP_0798at 916.864 kb on - strand, within PP_0798at 916.864 kb on - strand, within PP_0798at 916.864 kb on - strand, within PP_0798at 916.987 kb on - strand, within PP_0798at 917.044 kb on + strand, within PP_0798at 917.062 kb on + strand, within PP_0798at 917.062 kb on + strand, within PP_0798at 917.062 kb on + strand, within PP_0798at 917.062 kb on + strand, within PP_0798at 917.063 kb on - strand, within PP_0798at 917.186 kb on - strand, within PP_0798at 917.207 kb on - strand, within PP_0798at 917.355 kb on + strand, within PP_0798at 917.356 kb on - strand, within PP_0798at 917.356 kb on - strand, within PP_0798at 917.460 kb on + strandat 917.460 kb on + strandat 917.460 kb on + strandat 917.461 kb on - strandat 917.461 kb on - strandat 917.535 kb on + strandat 917.574 kb on - strandat 917.606 kb on - strandat 917.659 kb on + strandat 917.659 kb on + strandat 917.660 kb on - strandat 917.664 kb on + strandat 917.692 kb on - strandat 917.692 kb on - strandat 917.692 kb on - strandat 917.692 kb on - strandat 917.747 kb on + strandat 917.747 kb on + strandat 917.748 kb on - strandat 917.748 kb on - strandat 917.748 kb on - strandat 917.748 kb on - strandat 917.838 kb on + strandat 917.839 kb on - strandat 917.866 kb on - strandat 917.866 kb on - strandat 917.866 kb on - strandat 917.870 kb on + strandat 917.870 kb on + strandat 917.871 kb on - strandat 917.871 kb on - strandat 917.871 kb on - strandat 917.909 kb on + strand, within PP_0799at 917.910 kb on - strand, within PP_0799at 917.910 kb on - strand, within PP_0799at 917.913 kb on + strand, within PP_0799at 917.913 kb on + strand, within PP_0799at 917.914 kb on - strand, within PP_0799at 917.968 kb on - strand, within PP_0799at 917.968 kb on - strand, within PP_0799at 917.968 kb on - strand, within PP_0799at 917.970 kb on + strand, within PP_0799at 917.971 kb on - strand, within PP_0799at 917.971 kb on - strand, within PP_0799at 917.977 kb on - strand, within PP_0799at 917.977 kb on - strand, within PP_0799at 918.075 kb on + strand, within PP_0799at 918.076 kb on - strand, within PP_0799at 918.081 kb on + strand, within PP_0799at 918.081 kb on + strand, within PP_0799at 918.127 kb on - strand, within PP_0799at 918.127 kb on - strand, within PP_0799at 918.147 kb on + strand, within PP_0799at 918.147 kb on + strand, within PP_0799at 918.148 kb on - strand, within PP_0799at 918.171 kb on + strand, within PP_0799at 918.171 kb on + strand, within PP_0799at 918.241 kb on + strand, within PP_0799at 918.241 kb on + strand, within PP_0799at 918.255 kb on + strand, within PP_0799at 918.255 kb on + strand, within PP_0799at 918.255 kb on + strand, within PP_0799at 918.255 kb on + strand, within PP_0799at 918.255 kb on + strand, within PP_0799at 918.256 kb on - strand, within PP_0799at 918.256 kb on - strand, within PP_0799at 918.256 kb on - strand, within PP_0799at 918.256 kb on - strand, within PP_0799at 918.256 kb on - strand, within PP_0799at 918.256 kb on - strand, within PP_0799at 918.256 kb on - strand, within PP_0799at 918.278 kb on + strand, within PP_0799at 918.309 kb on + strand, within PP_0799at 918.310 kb on - strand, within PP_0799at 918.310 kb on - strand, within PP_0799at 918.310 kb on - strand, within PP_0799at 918.310 kb on - strand, within PP_0799at 918.354 kb on + strand, within PP_0799at 918.354 kb on + strand, within PP_0799at 918.354 kb on + strand, within PP_0799at 918.354 kb on + strand, within PP_0799at 918.354 kb on + strand, within PP_0799at 918.354 kb on + strand, within PP_0799at 918.354 kb on + strandat 918.354 kb on + strand, within PP_0799at 918.354 kb on + strandat 918.355 kb on - strand, within PP_0799at 918.355 kb on - strand, within PP_0799at 918.355 kb on - strand, within PP_0799at 918.355 kb on - strand, within PP_0799at 918.355 kb on - strand, within PP_0799at 918.355 kb on - strand, within PP_0799at 918.355 kb on - strand, within PP_0799at 918.355 kb on - strand, within PP_0799at 918.355 kb on - strand, within PP_0799at 918.355 kb on - strand, within PP_0799at 918.355 kb on - strand, within PP_0799at 918.355 kb on - strand, within PP_0799at 918.360 kb on + strand, within PP_0799at 918.360 kb on + strand, within PP_0799at 918.360 kb on + strand, within PP_0799at 918.361 kb on - strand, within PP_0799at 918.375 kb on + strand, within PP_0799at 918.375 kb on + strand, within PP_0799at 918.375 kb on + strand, within PP_0799at 918.376 kb on - strand, within PP_0799at 918.378 kb on + strand, within PP_0799at 918.378 kb on + strand, within PP_0799at 918.502 kb on - strand, within PP_0799at 918.502 kb on - strand, within PP_0799at 918.504 kb on + strand, within PP_0799at 918.505 kb on - strand, within PP_0799at 918.505 kb on - strand, within PP_0799at 918.505 kb on - strand, within PP_0799at 918.505 kb on - strand, within PP_0799at 918.537 kb on + strand, within PP_0799at 918.537 kb on + strand, within PP_0799at 918.538 kb on - strand, within PP_0799

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pH 5
remove
915,097 + +4.1
915,098 - +0.2
915,213 + PP_0796 0.11 -1.6
915,214 - PP_0796 0.12 -0.8
915,214 - PP_0796 0.12 -0.4
915,214 - PP_0796 0.12 +1.6
915,311 - PP_0796 0.45 +0.5
915,311 - PP_0796 0.45 +0.4
915,347 - PP_0796 0.58 +0.2
915,347 - PP_0796 0.58 -0.8
915,378 + PP_0796 0.69 -0.1
915,379 - PP_0796 0.69 +3.3
915,379 - PP_0796 0.69 -0.8
915,379 - PP_0796 0.69 +2.2
915,436 + PP_0796 0.89 -2.3
915,580 - -0.5
915,634 + PP_0797 0.17 -0.8
915,654 + PP_0797 0.21 +0.9
915,655 - PP_0797 0.21 +0.2
915,655 - PP_0797 0.21 +1.0
915,813 - PP_0797 0.51 +2.2
915,933 + PP_0797 0.73 +1.7
915,965 - PP_0797 0.79 +1.8
915,990 + PP_0797 0.83 +0.0
915,990 + PP_0797 0.83 -0.8
915,990 + PP_0797 0.83 -1.4
915,991 - PP_0797 0.84 +0.2
915,991 - PP_0797 0.84 +0.0
915,991 - PP_0797 0.84 +0.3
915,991 - PP_0797 0.84 -3.8
916,077 + -2.1
916,307 + PP_0798 0.15 +1.9
916,307 + PP_0798 0.15 -1.6
916,329 + PP_0798 0.17 +0.7
916,478 - PP_0798 0.27 -0.2
916,483 + PP_0798 0.27 -2.2
916,483 + PP_0798 0.27 -4.8
916,484 - PP_0798 0.27 +2.4
916,731 - PP_0798 0.44 +0.1
916,813 + PP_0798 0.49 +0.6
916,813 + PP_0798 0.49 -1.6
916,860 + PP_0798 0.53 -0.4
916,861 - PP_0798 0.53 +1.2
916,861 - PP_0798 0.53 +1.1
916,863 + PP_0798 0.53 +0.7
916,863 + PP_0798 0.53 +0.2
916,863 + -2.4
916,863 + PP_0798 0.53 -1.0
916,863 + PP_0798 0.53 -0.3
916,863 + PP_0798 0.53 -0.1
916,864 - PP_0798 0.53 -1.4
916,864 - PP_0798 0.53 +1.6
916,864 - PP_0798 0.53 +1.2
916,987 - PP_0798 0.61 +3.0
917,044 + PP_0798 0.65 +0.3
917,062 + PP_0798 0.66 -0.0
917,062 + PP_0798 0.66 -0.7
917,062 + PP_0798 0.66 +0.3
917,062 + PP_0798 0.66 +0.5
917,063 - PP_0798 0.66 +0.4
917,186 - PP_0798 0.74 -0.3
917,207 - PP_0798 0.76 +1.3
917,355 + PP_0798 0.86 -0.8
917,356 - PP_0798 0.86 -0.5
917,356 - PP_0798 0.86 -0.5
917,460 + +1.6
917,460 + +0.2
917,460 + +1.7
917,461 - +0.9
917,461 - -1.6
917,535 + -0.8
917,574 - +0.0
917,606 - -0.8
917,659 + -1.8
917,659 + -0.1
917,660 - -2.4
917,664 + -0.6
917,692 - +3.7
917,692 - +0.8
917,692 - +1.8
917,692 - -1.0
917,747 + +1.7
917,747 + -1.1
917,748 - +0.3
917,748 - -1.7
917,748 - -3.7
917,748 - +0.2
917,838 + +0.2
917,839 - +0.7
917,866 - -0.7
917,866 - +2.2
917,866 - -3.9
917,870 + -0.3
917,870 + -2.2
917,871 - +3.9
917,871 - -3.7
917,871 - -0.2
917,909 + PP_0799 0.11 +0.4
917,910 - PP_0799 0.11 +0.2
917,910 - PP_0799 0.11 -2.5
917,913 + PP_0799 0.11 +2.9
917,913 + PP_0799 0.11 +1.4
917,914 - PP_0799 0.11 -0.4
917,968 - PP_0799 0.15 -2.2
917,968 - PP_0799 0.15 -1.0
917,968 - PP_0799 0.15 -0.5
917,970 + PP_0799 0.15 -2.2
917,971 - PP_0799 0.15 +1.9
917,971 - PP_0799 0.15 +0.7
917,977 - PP_0799 0.16 +5.7
917,977 - PP_0799 0.16 -1.7
918,075 + PP_0799 0.23 -0.8
918,076 - PP_0799 0.23 +1.0
918,081 + PP_0799 0.24 +1.2
918,081 + PP_0799 0.24 +1.7
918,127 - PP_0799 0.27 -4.2
918,127 - PP_0799 0.27 -0.8
918,147 + PP_0799 0.29 +1.2
918,147 + PP_0799 0.29 -0.3
918,148 - PP_0799 0.29 -2.2
918,171 + PP_0799 0.30 +1.0
918,171 + PP_0799 0.30 -2.4
918,241 + PP_0799 0.36 +3.3
918,241 + PP_0799 0.36 -0.2
918,255 + PP_0799 0.37 -0.5
918,255 + PP_0799 0.37 +3.2
918,255 + PP_0799 0.37 -0.1
918,255 + PP_0799 0.37 +1.4
918,255 + PP_0799 0.37 -1.2
918,256 - PP_0799 0.37 +1.7
918,256 - PP_0799 0.37 +2.6
918,256 - PP_0799 0.37 -1.2
918,256 - PP_0799 0.37 +0.2
918,256 - PP_0799 0.37 +3.0
918,256 - PP_0799 0.37 -0.8
918,256 - PP_0799 0.37 +5.0
918,278 + PP_0799 0.38 -1.8
918,309 + PP_0799 0.41 -2.6
918,310 - PP_0799 0.41 -1.0
918,310 - PP_0799 0.41 +1.6
918,310 - PP_0799 0.41 -0.0
918,310 - PP_0799 0.41 -0.6
918,354 + PP_0799 0.44 -0.9
918,354 + PP_0799 0.44 -2.8
918,354 + PP_0799 0.44 -2.4
918,354 + PP_0799 0.44 -0.7
918,354 + PP_0799 0.44 -0.4
918,354 + PP_0799 0.44 -0.7
918,354 + +2.5
918,354 + PP_0799 0.44 +0.4
918,354 + -1.8
918,355 - PP_0799 0.44 +1.0
918,355 - PP_0799 0.44 -0.3
918,355 - PP_0799 0.44 +0.4
918,355 - PP_0799 0.44 +0.3
918,355 - PP_0799 0.44 +2.0
918,355 - PP_0799 0.44 -2.4
918,355 - PP_0799 0.44 +0.0
918,355 - PP_0799 0.44 -3.4
918,355 - PP_0799 0.44 -0.5
918,355 - PP_0799 0.44 +0.5
918,355 - PP_0799 0.44 -2.2
918,355 - PP_0799 0.44 -0.3
918,360 + PP_0799 0.45 +0.5
918,360 + PP_0799 0.45 +3.2
918,360 + PP_0799 0.45 +2.7
918,361 - PP_0799 0.45 -3.4
918,375 + PP_0799 0.46 -0.4
918,375 + PP_0799 0.46 -0.8
918,375 + PP_0799 0.46 +0.6
918,376 - PP_0799 0.46 -1.7
918,378 + PP_0799 0.46 +0.5
918,378 + PP_0799 0.46 +0.2
918,502 - PP_0799 0.55 +0.3
918,502 - PP_0799 0.55 +0.9
918,504 + PP_0799 0.55 -1.0
918,505 - PP_0799 0.55 -1.1
918,505 - PP_0799 0.55 -0.1
918,505 - PP_0799 0.55 +0.3
918,505 - PP_0799 0.55 +0.4
918,537 + PP_0799 0.58 +0.7
918,537 + PP_0799 0.58 +1.7
918,538 - PP_0799 0.58 +0.8

Or see this region's nucleotide sequence