Experiment: pH 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0790 and PP_0791 are separated by 44 nucleotides PP_0791 and PP_0792 are separated by 2 nucleotides PP_0792 and PP_0793 are separated by 284 nucleotides
PP_0790: PP_0790 - Inner membrane protein AmpE, at 906,559 to 907,389
_0790
PP_0791: PP_0791 - putative hydrolase, at 907,434 to 908,210
_0791
PP_0792: PP_0792 - catabolite repressor-activator, DNA-binding transcriptional dual regulator, at 908,213 to 909,208
_0792
PP_0793: PP_0793 - Phosphotransferase system, fructose-specific EI/HPr/EIIA components, at 909,493 to 912,345
_0793
Position (kb) 908
909
910 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 907.554 kb on + strand, within PP_0791 at 907.564 kb on + strand, within PP_0791 at 907.705 kb on + strand, within PP_0791 at 907.706 kb on - strand, within PP_0791 at 907.724 kb on - strand, within PP_0791 at 907.724 kb on - strand, within PP_0791 at 907.724 kb on - strand, within PP_0791 at 907.769 kb on - strand, within PP_0791 at 907.769 kb on - strand, within PP_0791 at 907.769 kb on - strand, within PP_0791 at 907.904 kb on - strand, within PP_0791 at 907.906 kb on + strand, within PP_0791 at 907.907 kb on - strand, within PP_0791 at 907.907 kb on - strand, within PP_0791 at 907.907 kb on - strand, within PP_0791 at 907.927 kb on - strand, within PP_0791 at 907.927 kb on - strand, within PP_0791 at 907.927 kb on - strand, within PP_0791 at 907.935 kb on + strand, within PP_0791 at 908.012 kb on - strand, within PP_0791 at 908.092 kb on + strand, within PP_0791 at 908.092 kb on + strand, within PP_0791 at 908.092 kb on + strand, within PP_0791 at 908.092 kb on + strand, within PP_0791 at 908.093 kb on - strand, within PP_0791 at 908.093 kb on - strand, within PP_0791 at 908.271 kb on + strand at 908.272 kb on - strand at 908.272 kb on - strand at 908.466 kb on + strand, within PP_0792 at 908.467 kb on - strand, within PP_0792 at 908.467 kb on - strand, within PP_0792 at 908.467 kb on - strand, within PP_0792 at 908.467 kb on - strand, within PP_0792 at 908.467 kb on - strand, within PP_0792 at 908.566 kb on - strand, within PP_0792 at 908.586 kb on + strand, within PP_0792 at 908.586 kb on + strand, within PP_0792 at 908.587 kb on - strand, within PP_0792 at 908.809 kb on - strand, within PP_0792 at 908.934 kb on + strand, within PP_0792 at 908.982 kb on + strand, within PP_0792 at 908.983 kb on - strand, within PP_0792 at 908.983 kb on - strand, within PP_0792 at 909.029 kb on - strand, within PP_0792 at 909.109 kb on + strand at 909.153 kb on + strand at 909.153 kb on + strand at 909.153 kb on + strand at 909.224 kb on - strand at 909.224 kb on - strand at 909.224 kb on - strand at 909.256 kb on + strand at 909.256 kb on + strand at 909.345 kb on + strand at 909.435 kb on - strand at 909.435 kb on - strand at 909.435 kb on - strand at 909.453 kb on + strand at 909.454 kb on - strand at 909.454 kb on - strand at 909.454 kb on - strand at 909.454 kb on - strand at 909.607 kb on + strand at 909.607 kb on + strand at 909.681 kb on + strand at 909.681 kb on + strand at 909.682 kb on - strand at 909.706 kb on + strand at 909.719 kb on + strand at 909.747 kb on - strand at 909.772 kb on + strand at 909.773 kb on - strand at 909.786 kb on + strand, within PP_0793 at 909.786 kb on + strand, within PP_0793 at 909.786 kb on + strand, within PP_0793 at 909.787 kb on - strand, within PP_0793
Per-strain Table
Position Strand Gene LocusTag Fraction pH 5 remove 907,554 + PP_0791 0.15 +0.0 907,564 + PP_0791 0.17 +0.7 907,705 + PP_0791 0.35 -1.8 907,706 - PP_0791 0.35 +1.0 907,724 - PP_0791 0.37 +0.9 907,724 - PP_0791 0.37 -1.6 907,724 - PP_0791 0.37 +2.2 907,769 - PP_0791 0.43 +0.2 907,769 - PP_0791 0.43 -1.4 907,769 - PP_0791 0.43 +1.2 907,904 - PP_0791 0.60 -0.4 907,906 + PP_0791 0.61 -1.7 907,907 - PP_0791 0.61 +0.7 907,907 - PP_0791 0.61 +3.9 907,907 - PP_0791 0.61 +0.7 907,927 - PP_0791 0.63 -0.5 907,927 - PP_0791 0.63 -1.8 907,927 - PP_0791 0.63 +2.2 907,935 + PP_0791 0.64 +0.2 908,012 - PP_0791 0.74 -0.1 908,092 + PP_0791 0.85 -0.4 908,092 + PP_0791 0.85 -0.1 908,092 + PP_0791 0.85 -0.9 908,092 + PP_0791 0.85 -1.0 908,093 - PP_0791 0.85 -0.2 908,093 - PP_0791 0.85 +1.9 908,271 + +1.5 908,272 - -1.1 908,272 - -1.1 908,466 + PP_0792 0.25 +2.2 908,467 - PP_0792 0.26 -3.6 908,467 - PP_0792 0.26 +0.0 908,467 - PP_0792 0.26 +3.2 908,467 - PP_0792 0.26 +0.4 908,467 - PP_0792 0.26 -1.8 908,566 - PP_0792 0.35 -0.2 908,586 + PP_0792 0.37 -1.8 908,586 + PP_0792 0.37 -3.4 908,587 - PP_0792 0.38 +1.7 908,809 - PP_0792 0.60 +0.9 908,934 + PP_0792 0.72 -3.9 908,982 + PP_0792 0.77 -0.3 908,983 - PP_0792 0.77 +1.5 908,983 - PP_0792 0.77 -1.8 909,029 - PP_0792 0.82 +2.2 909,109 + -2.7 909,153 + +2.7 909,153 + -1.4 909,153 + -2.1 909,224 - -0.2 909,224 - +0.2 909,224 - -0.0 909,256 + -4.7 909,256 + -5.2 909,345 + -1.4 909,435 - +0.2 909,435 - +1.3 909,435 - +0.2 909,453 + -2.8 909,454 - +0.4 909,454 - +4.7 909,454 - -0.7 909,454 - +0.9 909,607 + -3.2 909,607 + -1.4 909,681 + +3.5 909,681 + -0.5 909,682 - +0.2 909,706 + -0.0 909,719 + +0.2 909,747 - -0.2 909,772 + +2.3 909,773 - +0.4 909,786 + PP_0793 0.10 -0.3 909,786 + PP_0793 0.10 +0.7 909,786 + PP_0793 0.10 -0.8 909,787 - PP_0793 0.10 -3.8
Or see this region's nucleotide sequence