Experiment: pH 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0662 and PP_0663 overlap by 4 nucleotides PP_0663 and PP_0664 are separated by 198 nucleotides
PP_0662: PP_0662 - putative Threonine synthase, at 770,317 to 771,705
_0662
PP_0663: PP_0663 - Transcriptional regulator, AsnC family, at 771,702 to 772,139
_0663
PP_0664: PP_0664 - homoserine dehydrogenase, at 772,338 to 773,381
_0664
Position (kb) 771
772
773 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 770.805 kb on - strand, within PP_0662 at 770.805 kb on - strand, within PP_0662 at 770.806 kb on + strand, within PP_0662 at 770.807 kb on - strand, within PP_0662 at 770.807 kb on - strand, within PP_0662 at 771.014 kb on - strand, within PP_0662 at 771.014 kb on - strand, within PP_0662 at 771.014 kb on - strand, within PP_0662 at 771.014 kb on - strand, within PP_0662 at 771.014 kb on - strand, within PP_0662 at 771.094 kb on + strand, within PP_0662 at 771.094 kb on + strand, within PP_0662 at 771.095 kb on - strand, within PP_0662 at 771.095 kb on - strand, within PP_0662 at 771.095 kb on - strand, within PP_0662 at 771.196 kb on + strand, within PP_0662 at 771.283 kb on + strand, within PP_0662 at 771.283 kb on + strand, within PP_0662 at 771.284 kb on - strand, within PP_0662 at 771.284 kb on - strand, within PP_0662 at 771.284 kb on - strand, within PP_0662 at 771.394 kb on + strand, within PP_0662 at 771.395 kb on - strand, within PP_0662 at 771.461 kb on + strand, within PP_0662 at 771.485 kb on + strand, within PP_0662 at 771.486 kb on - strand, within PP_0662 at 771.863 kb on + strand, within PP_0663 at 771.863 kb on + strand, within PP_0663 at 771.864 kb on - strand, within PP_0663 at 771.864 kb on - strand, within PP_0663 at 771.864 kb on - strand, within PP_0663 at 771.924 kb on + strand, within PP_0663 at 771.924 kb on + strand, within PP_0663 at 771.931 kb on - strand, within PP_0663 at 772.159 kb on + strand at 772.249 kb on + strand at 772.250 kb on - strand at 772.254 kb on - strand at 772.254 kb on - strand at 772.293 kb on + strand at 772.293 kb on + strand at 772.293 kb on + strand at 772.293 kb on + strand at 772.293 kb on + strand at 772.293 kb on + strand at 772.294 kb on - strand at 772.298 kb on + strand at 772.299 kb on - strand at 772.299 kb on - strand at 772.788 kb on + strand, within PP_0664 at 772.827 kb on - strand, within PP_0664 at 772.862 kb on - strand, within PP_0664 at 772.886 kb on + strand, within PP_0664 at 772.886 kb on + strand, within PP_0664 at 772.887 kb on - strand, within PP_0664 at 772.892 kb on + strand, within PP_0664 at 772.892 kb on + strand, within PP_0664 at 772.893 kb on - strand, within PP_0664 at 772.893 kb on - strand, within PP_0664 at 772.893 kb on - strand, within PP_0664 at 772.896 kb on + strand, within PP_0664 at 772.896 kb on + strand, within PP_0664 at 772.896 kb on + strand, within PP_0664 at 772.896 kb on + strand, within PP_0664 at 772.896 kb on + strand, within PP_0664 at 772.896 kb on + strand, within PP_0664 at 772.897 kb on - strand, within PP_0664 at 772.897 kb on - strand, within PP_0664 at 772.897 kb on - strand, within PP_0664 at 772.897 kb on - strand, within PP_0664 at 773.008 kb on + strand, within PP_0664 at 773.008 kb on + strand, within PP_0664 at 773.008 kb on + strand, within PP_0664 at 773.009 kb on - strand, within PP_0664 at 773.009 kb on - strand, within PP_0664 at 773.009 kb on - strand, within PP_0664
Per-strain Table
Position Strand Gene LocusTag Fraction pH 5 remove 770,805 - PP_0662 0.35 +2.3 770,805 - PP_0662 0.35 -0.6 770,806 + PP_0662 0.35 -3.1 770,807 - PP_0662 0.35 -3.6 770,807 - PP_0662 0.35 +2.7 771,014 - PP_0662 0.50 -0.9 771,014 - PP_0662 0.50 -0.9 771,014 - PP_0662 0.50 +0.8 771,014 - PP_0662 0.50 +0.8 771,014 - PP_0662 0.50 -1.9 771,094 + PP_0662 0.56 -0.4 771,094 + PP_0662 0.56 -0.3 771,095 - PP_0662 0.56 -2.1 771,095 - PP_0662 0.56 -1.4 771,095 - PP_0662 0.56 -2.7 771,196 + PP_0662 0.63 +0.7 771,283 + PP_0662 0.70 -0.4 771,283 + PP_0662 0.70 +0.3 771,284 - PP_0662 0.70 -0.4 771,284 - PP_0662 0.70 -0.9 771,284 - PP_0662 0.70 -0.6 771,394 + PP_0662 0.78 -0.7 771,395 - PP_0662 0.78 +0.9 771,461 + PP_0662 0.82 +0.7 771,485 + PP_0662 0.84 +1.0 771,486 - PP_0662 0.84 -1.4 771,863 + PP_0663 0.37 -0.2 771,863 + PP_0663 0.37 +2.4 771,864 - PP_0663 0.37 +2.3 771,864 - PP_0663 0.37 +0.1 771,864 - PP_0663 0.37 +1.8 771,924 + PP_0663 0.51 -0.5 771,924 + PP_0663 0.51 +0.1 771,931 - PP_0663 0.52 +4.2 772,159 + +3.5 772,249 + +3.3 772,250 - +1.7 772,254 - -0.1 772,254 - -1.9 772,293 + +0.4 772,293 + -1.0 772,293 + -1.2 772,293 + +0.3 772,293 + -2.3 772,293 + +0.1 772,294 - -0.9 772,298 + -0.1 772,299 - -3.2 772,299 - -0.5 772,788 + PP_0664 0.43 -1.9 772,827 - PP_0664 0.47 +1.5 772,862 - PP_0664 0.50 +0.1 772,886 + PP_0664 0.52 -1.5 772,886 + PP_0664 0.52 -1.9 772,887 - PP_0664 0.53 +0.4 772,892 + PP_0664 0.53 +3.3 772,892 + PP_0664 0.53 -1.1 772,893 - PP_0664 0.53 +2.1 772,893 - PP_0664 0.53 +3.4 772,893 - PP_0664 0.53 -1.9 772,896 + PP_0664 0.53 -0.3 772,896 + PP_0664 0.53 +0.3 772,896 + PP_0664 0.53 -3.5 772,896 + PP_0664 0.53 +0.6 772,896 + PP_0664 0.53 -3.1 772,896 + PP_0664 0.53 -1.1 772,897 - PP_0664 0.54 -0.7 772,897 - PP_0664 0.54 +0.7 772,897 - PP_0664 0.54 +0.6 772,897 - PP_0664 0.54 +3.1 773,008 + PP_0664 0.64 +1.7 773,008 + PP_0664 0.64 -1.7 773,008 + PP_0664 0.64 +0.3 773,009 - PP_0664 0.64 +1.1 773,009 - PP_0664 0.64 -0.2 773,009 - PP_0664 0.64 +0.2
Or see this region's nucleotide sequence