Experiment: pH 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0532 and PP_0533 are separated by 100 nucleotides PP_0533 and PP_0534 overlap by 1 nucleotides PP_0534 and PP_0535 are separated by 181 nucleotides
PP_0532: PP_0532 - conserved exported protein of unknown function, at 617,675 to 618,568
_0532
PP_0533: PP_0533 - histidine kinase, at 618,669 to 619,997
_0533
PP_0534: PP_0534 - putative Transcriptional regulator PfeR, at 619,997 to 620,689
_0534
PP_0535: PP_0535 - Outer membrane ferric siderophore receptor, at 620,871 to 623,048
_0535
Position (kb) 618
619
620 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 617.977 kb on - strand, within PP_0532 at 618.033 kb on + strand, within PP_0532 at 618.033 kb on + strand, within PP_0532 at 618.034 kb on - strand, within PP_0532 at 618.034 kb on - strand, within PP_0532 at 618.034 kb on - strand, within PP_0532 at 618.034 kb on - strand, within PP_0532 at 618.034 kb on - strand, within PP_0532 at 618.199 kb on - strand, within PP_0532 at 618.447 kb on + strand, within PP_0532 at 618.447 kb on + strand, within PP_0532 at 618.623 kb on - strand at 618.634 kb on - strand at 618.634 kb on - strand at 618.642 kb on + strand at 618.642 kb on + strand at 618.643 kb on - strand at 618.652 kb on + strand at 618.653 kb on - strand at 618.812 kb on - strand, within PP_0533 at 619.182 kb on + strand, within PP_0533 at 619.473 kb on + strand, within PP_0533 at 619.474 kb on - strand, within PP_0533 at 619.485 kb on + strand, within PP_0533 at 619.486 kb on - strand, within PP_0533 at 619.627 kb on + strand, within PP_0533 at 619.627 kb on + strand, within PP_0533 at 619.746 kb on + strand, within PP_0533 at 619.747 kb on - strand, within PP_0533 at 619.747 kb on - strand, within PP_0533 at 619.849 kb on + strand, within PP_0533 at 619.888 kb on + strand at 619.888 kb on + strand at 619.888 kb on + strand at 619.888 kb on + strand at 619.889 kb on - strand at 619.889 kb on - strand at 619.889 kb on - strand at 619.893 kb on - strand at 619.893 kb on - strand at 620.026 kb on - strand at 620.026 kb on - strand at 620.026 kb on - strand at 620.026 kb on - strand at 620.131 kb on + strand, within PP_0534 at 620.132 kb on - strand, within PP_0534 at 620.132 kb on - strand, within PP_0534 at 620.134 kb on - strand, within PP_0534 at 620.134 kb on - strand, within PP_0534 at 620.134 kb on - strand, within PP_0534 at 620.158 kb on - strand, within PP_0534 at 620.230 kb on + strand, within PP_0534 at 620.230 kb on + strand, within PP_0534 at 620.231 kb on - strand, within PP_0534 at 620.395 kb on - strand, within PP_0534 at 620.395 kb on - strand, within PP_0534 at 620.564 kb on + strand, within PP_0534 at 620.564 kb on + strand, within PP_0534 at 620.768 kb on - strand at 620.768 kb on - strand at 620.768 kb on - strand at 620.768 kb on - strand at 620.776 kb on + strand at 620.777 kb on - strand at 620.777 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH 5 remove 617,977 - PP_0532 0.34 +0.1 618,033 + PP_0532 0.40 +0.1 618,033 + PP_0532 0.40 +2.1 618,034 - PP_0532 0.40 +0.3 618,034 - PP_0532 0.40 +0.3 618,034 - PP_0532 0.40 -3.0 618,034 - PP_0532 0.40 +1.6 618,034 - PP_0532 0.40 -0.4 618,199 - PP_0532 0.59 -3.6 618,447 + PP_0532 0.86 -1.3 618,447 + PP_0532 0.86 -3.2 618,623 - +4.4 618,634 - -0.2 618,634 - +0.1 618,642 + +0.6 618,642 + +1.9 618,643 - +0.7 618,652 + -0.9 618,653 - -2.1 618,812 - PP_0533 0.11 +1.0 619,182 + PP_0533 0.39 +0.5 619,473 + PP_0533 0.60 -1.9 619,474 - PP_0533 0.61 -2.2 619,485 + PP_0533 0.61 -1.5 619,486 - PP_0533 0.61 -1.0 619,627 + PP_0533 0.72 -0.6 619,627 + PP_0533 0.72 -0.1 619,746 + PP_0533 0.81 -3.0 619,747 - PP_0533 0.81 -0.6 619,747 - PP_0533 0.81 -2.2 619,849 + PP_0533 0.89 +1.1 619,888 + -1.4 619,888 + -2.4 619,888 + -0.8 619,888 + +0.5 619,889 - +1.0 619,889 - +0.1 619,889 - +2.9 619,893 - -0.4 619,893 - +1.4 620,026 - -0.0 620,026 - -0.9 620,026 - -0.5 620,026 - +0.1 620,131 + PP_0534 0.19 +0.1 620,132 - PP_0534 0.19 -1.3 620,132 - PP_0534 0.19 +0.1 620,134 - PP_0534 0.20 -1.4 620,134 - PP_0534 0.20 +2.1 620,134 - PP_0534 0.20 -0.2 620,158 - PP_0534 0.23 +0.1 620,230 + PP_0534 0.34 +1.2 620,230 + PP_0534 0.34 +0.0 620,231 - PP_0534 0.34 +0.4 620,395 - PP_0534 0.57 -2.2 620,395 - PP_0534 0.57 +0.4 620,564 + PP_0534 0.82 +1.6 620,564 + PP_0534 0.82 +1.0 620,768 - +0.5 620,768 - -0.5 620,768 - -1.1 620,768 - +0.1 620,776 + +0.2 620,777 - -1.4 620,777 - +0.1
Or see this region's nucleotide sequence