Strain Fitness in Pseudomonas putida KT2440 around PP_0416

Experiment: pH 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0414 and PP_0415 are separated by 150 nucleotidesPP_0415 and PP_0416 overlap by 4 nucleotidesPP_0416 and PP_0417 are separated by 69 nucleotides PP_0414: PP_0414 - Polyamine ABC transporter, permease protein, at 502,970 to 503,797 _0414 PP_0415: PP_0415 - ribulose-5-phosphate 3-epimerase, at 503,948 to 504,622 _0415 PP_0416: PP_0416 - Phosphoglycolate phosphatase, at 504,619 to 505,437 _0416 PP_0417: PP_0417 - Anthranilate synthase component 1, at 505,507 to 506,988 _0417 Position (kb) 504 505 506Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4at 503.878 kb on + strandat 503.879 kb on - strandat 503.909 kb on + strandat 503.957 kb on + strandat 503.957 kb on + strandat 504.896 kb on - strand, within PP_0416at 504.896 kb on - strand, within PP_0416at 504.896 kb on - strand, within PP_0416at 504.916 kb on - strand, within PP_0416at 505.222 kb on + strand, within PP_0416at 505.223 kb on - strand, within PP_0416at 505.223 kb on - strand, within PP_0416at 505.223 kb on - strand, within PP_0416at 505.229 kb on - strand, within PP_0416at 505.230 kb on + strand, within PP_0416at 505.231 kb on - strand, within PP_0416at 505.481 kb on + strandat 505.481 kb on + strandat 505.481 kb on + strandat 505.481 kb on + strandat 505.482 kb on - strandat 505.482 kb on - strandat 505.482 kb on - strandat 505.482 kb on - strandat 505.555 kb on - strandat 505.607 kb on - strandat 505.636 kb on + strandat 505.637 kb on - strandat 505.678 kb on + strand, within PP_0417at 505.726 kb on + strand, within PP_0417at 505.894 kb on + strand, within PP_0417at 506.168 kb on - strand, within PP_0417at 506.202 kb on + strand, within PP_0417at 506.212 kb on + strand, within PP_0417at 506.212 kb on + strand, within PP_0417at 506.212 kb on + strand, within PP_0417at 506.212 kb on + strand, within PP_0417at 506.212 kb on + strand, within PP_0417at 506.213 kb on - strand, within PP_0417at 506.232 kb on + strand, within PP_0417at 506.232 kb on + strand, within PP_0417at 506.232 kb on + strand, within PP_0417at 506.233 kb on - strand, within PP_0417at 506.233 kb on - strand, within PP_0417at 506.233 kb on - strand, within PP_0417at 506.233 kb on - strand, within PP_0417at 506.233 kb on - strand, within PP_0417at 506.233 kb on - strand, within PP_0417at 506.233 kb on - strand, within PP_0417at 506.233 kb on - strand, within PP_0417at 506.326 kb on + strand, within PP_0417at 506.326 kb on + strand, within PP_0417at 506.326 kb on + strand, within PP_0417at 506.326 kb on + strand, within PP_0417at 506.326 kb on + strand, within PP_0417at 506.326 kb on + strand, within PP_0417at 506.326 kb on + strand, within PP_0417at 506.326 kb on + strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.328 kb on + strand, within PP_0417at 506.328 kb on + strand, within PP_0417at 506.328 kb on + strand, within PP_0417at 506.328 kb on + strand, within PP_0417at 506.328 kb on + strand, within PP_0417at 506.328 kb on + strand, within PP_0417at 506.328 kb on + strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.332 kb on + strand, within PP_0417at 506.332 kb on + strand, within PP_0417at 506.332 kb on + strand, within PP_0417at 506.333 kb on - strand, within PP_0417at 506.333 kb on - strand, within PP_0417at 506.333 kb on - strand, within PP_0417at 506.333 kb on - strand, within PP_0417at 506.333 kb on - strand, within PP_0417at 506.333 kb on - strand, within PP_0417at 506.387 kb on + strand, within PP_0417at 506.387 kb on + strand, within PP_0417at 506.387 kb on + strand, within PP_0417at 506.387 kb on + strand, within PP_0417at 506.388 kb on - strand, within PP_0417at 506.388 kb on - strand, within PP_0417at 506.388 kb on - strand, within PP_0417at 506.388 kb on - strand, within PP_0417

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Per-strain Table

Position Strand Gene LocusTag Fraction pH 5
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503,878 + -1.8
503,879 - -0.5
503,909 + -0.4
503,957 + +1.7
503,957 + -1.8
504,896 - PP_0416 0.34 -1.2
504,896 - PP_0416 0.34 -3.6
504,896 - PP_0416 0.34 +0.2
504,916 - PP_0416 0.36 -1.6
505,222 + PP_0416 0.74 -1.3
505,223 - PP_0416 0.74 -2.0
505,223 - PP_0416 0.74 -0.8
505,223 - PP_0416 0.74 -3.9
505,229 - PP_0416 0.74 -0.3
505,230 + PP_0416 0.75 -0.1
505,231 - PP_0416 0.75 +0.2
505,481 + +0.2
505,481 + +1.2
505,481 + +0.3
505,481 + +4.6
505,482 - -4.0
505,482 - +0.2
505,482 - -4.2
505,482 - -3.8
505,555 - +0.2
505,607 - -4.4
505,636 + -4.0
505,637 - -4.7
505,678 + PP_0417 0.12 -3.4
505,726 + PP_0417 0.15 -2.4
505,894 + PP_0417 0.26 -2.4
506,168 - PP_0417 0.45 -3.3
506,202 + PP_0417 0.47 -5.3
506,212 + PP_0417 0.48 -3.3
506,212 + PP_0417 0.48 -5.0
506,212 + PP_0417 0.48 -3.0
506,212 + PP_0417 0.48 -3.9
506,212 + PP_0417 0.48 -4.1
506,213 - PP_0417 0.48 -5.3
506,232 + PP_0417 0.49 +0.2
506,232 + PP_0417 0.49 +1.2
506,232 + PP_0417 0.49 -3.9
506,233 - PP_0417 0.49 -2.1
506,233 - PP_0417 0.49 +0.2
506,233 - PP_0417 0.49 -4.8
506,233 - PP_0417 0.49 -5.1
506,233 - PP_0417 0.49 -1.8
506,233 - PP_0417 0.49 -3.1
506,233 - PP_0417 0.49 -0.9
506,233 - PP_0417 0.49 +0.2
506,326 + PP_0417 0.55 +0.2
506,326 + PP_0417 0.55 -2.6
506,326 + PP_0417 0.55 -5.5
506,326 + PP_0417 0.55 -1.8
506,326 + PP_0417 0.55 -3.4
506,326 + PP_0417 0.55 -1.8
506,326 + PP_0417 0.55 -3.3
506,326 + PP_0417 0.55 -1.4
506,327 - PP_0417 0.55 -2.6
506,327 - PP_0417 0.55 -3.3
506,327 - PP_0417 0.55 -3.7
506,327 - PP_0417 0.55 -4.5
506,327 - PP_0417 0.55 -4.4
506,327 - PP_0417 0.55 -2.6
506,327 - PP_0417 0.55 -3.5
506,327 - PP_0417 0.55 -2.6
506,327 - PP_0417 0.55 -1.8
506,327 - PP_0417 0.55 -0.8
506,327 - PP_0417 0.55 -3.1
506,327 - PP_0417 0.55 -2.0
506,327 - PP_0417 0.55 -2.6
506,327 - PP_0417 0.55 -2.1
506,327 - PP_0417 0.55 -4.2
506,327 - PP_0417 0.55 -2.4
506,327 - PP_0417 0.55 -4.1
506,327 - PP_0417 0.55 -5.8
506,328 + PP_0417 0.55 -3.9
506,328 + PP_0417 0.55 -3.8
506,328 + PP_0417 0.55 -3.3
506,328 + PP_0417 0.55 -3.1
506,328 + PP_0417 0.55 +0.2
506,328 + PP_0417 0.55 -2.8
506,328 + PP_0417 0.55 -3.5
506,329 - PP_0417 0.55 -4.8
506,329 - PP_0417 0.55 -2.2
506,329 - PP_0417 0.55 -2.4
506,329 - PP_0417 0.55 -4.6
506,329 - PP_0417 0.55 -4.5
506,329 - PP_0417 0.55 -2.3
506,329 - PP_0417 0.55 +0.2
506,329 - PP_0417 0.55 -1.4
506,329 - PP_0417 0.55 -2.6
506,329 - PP_0417 0.55 -4.6
506,329 - PP_0417 0.55 -3.5
506,329 - PP_0417 0.55 -4.4
506,329 - PP_0417 0.55 -2.6
506,329 - PP_0417 0.55 -1.8
506,329 - PP_0417 0.55 -4.8
506,329 - PP_0417 0.55 -4.0
506,329 - PP_0417 0.55 -2.7
506,329 - PP_0417 0.55 -2.1
506,332 + PP_0417 0.56 -3.9
506,332 + PP_0417 0.56 -3.4
506,332 + PP_0417 0.56 -5.0
506,333 - PP_0417 0.56 +0.2
506,333 - PP_0417 0.56 -3.8
506,333 - PP_0417 0.56 -3.0
506,333 - PP_0417 0.56 -4.6
506,333 - PP_0417 0.56 -4.4
506,333 - PP_0417 0.56 -3.0
506,387 + PP_0417 0.59 +0.2
506,387 + PP_0417 0.59 -5.2
506,387 + PP_0417 0.59 -2.4
506,387 + PP_0417 0.59 +0.2
506,388 - PP_0417 0.59 -2.4
506,388 - PP_0417 0.59 -3.5
506,388 - PP_0417 0.59 -4.2
506,388 - PP_0417 0.59 -3.2

Or see this region's nucleotide sequence