Strain Fitness in Pseudomonas putida KT2440 around PP_0337

Experiment: pH 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0335 and PP_0336 are separated by 3 nucleotidesPP_0336 and PP_0337 are separated by 168 nucleotidesPP_0337 and PP_0338 are separated by 307 nucleotides PP_0335: PP_0335 - Glutathione S-transferase family protein, at 401,902 to 402,525 _0335 PP_0336: PP_0336 - Peptide methionine sulfoxide reductase MsrA, at 402,529 to 403,197 _0336 PP_0337: PP_0337 - Sensory box protein, at 403,366 to 406,056 _0337 PP_0338: PP_0338 - AceF-S-acetyldihydrolipoate, at 406,364 to 408,004 _0338 Position (kb) 403 404 405 406 407Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 402.412 kb on + strand, within PP_0335at 402.412 kb on + strand, within PP_0335at 402.412 kb on + strand, within PP_0335at 402.412 kb on + strand, within PP_0335at 402.412 kb on + strand, within PP_0335at 402.413 kb on - strand, within PP_0335at 402.413 kb on - strand, within PP_0335at 402.413 kb on - strand, within PP_0335at 402.413 kb on - strand, within PP_0335at 402.534 kb on + strandat 402.608 kb on + strand, within PP_0336at 402.608 kb on + strand, within PP_0336at 402.621 kb on - strand, within PP_0336at 402.635 kb on + strand, within PP_0336at 402.755 kb on + strand, within PP_0336at 402.755 kb on + strand, within PP_0336at 402.756 kb on - strand, within PP_0336at 402.756 kb on - strand, within PP_0336at 402.756 kb on - strand, within PP_0336at 402.852 kb on - strand, within PP_0336at 402.926 kb on + strand, within PP_0336at 402.926 kb on + strand, within PP_0336at 402.926 kb on + strand, within PP_0336at 402.926 kb on + strand, within PP_0336at 402.926 kb on + strand, within PP_0336at 402.927 kb on - strand, within PP_0336at 402.927 kb on - strand, within PP_0336at 402.930 kb on + strand, within PP_0336at 402.930 kb on + strand, within PP_0336at 402.930 kb on + strand, within PP_0336at 402.930 kb on + strand, within PP_0336at 402.930 kb on + strand, within PP_0336at 403.094 kb on + strand, within PP_0336at 403.094 kb on + strand, within PP_0336at 403.095 kb on - strand, within PP_0336at 403.095 kb on - strand, within PP_0336at 403.095 kb on - strand, within PP_0336at 403.216 kb on - strandat 403.267 kb on + strandat 403.268 kb on - strandat 403.268 kb on - strandat 403.268 kb on - strandat 403.340 kb on + strandat 403.340 kb on + strandat 403.340 kb on + strandat 403.340 kb on + strandat 403.340 kb on + strandat 403.341 kb on - strandat 403.341 kb on - strandat 403.343 kb on - strandat 403.343 kb on - strandat 403.356 kb on + strandat 403.356 kb on + strandat 403.389 kb on - strandat 403.442 kb on + strandat 403.641 kb on + strand, within PP_0337at 403.874 kb on - strand, within PP_0337at 403.874 kb on - strand, within PP_0337at 403.874 kb on - strand, within PP_0337at 403.874 kb on - strand, within PP_0337at 404.087 kb on + strand, within PP_0337at 404.087 kb on + strand, within PP_0337at 404.088 kb on - strand, within PP_0337at 404.088 kb on - strand, within PP_0337at 404.088 kb on - strand, within PP_0337at 404.150 kb on + strand, within PP_0337at 404.150 kb on + strand, within PP_0337at 404.151 kb on - strand, within PP_0337at 404.189 kb on - strand, within PP_0337at 404.199 kb on + strand, within PP_0337at 404.651 kb on + strand, within PP_0337at 404.651 kb on + strand, within PP_0337at 404.652 kb on - strand, within PP_0337at 404.705 kb on + strand, within PP_0337at 404.717 kb on + strand, within PP_0337at 404.717 kb on + strand, within PP_0337at 404.717 kb on + strand, within PP_0337at 404.717 kb on + strand, within PP_0337at 404.718 kb on - strand, within PP_0337at 404.718 kb on - strand, within PP_0337at 404.718 kb on - strand, within PP_0337at 404.745 kb on - strand, within PP_0337at 404.775 kb on - strand, within PP_0337at 404.924 kb on + strand, within PP_0337at 404.924 kb on + strand, within PP_0337at 404.925 kb on - strand, within PP_0337at 404.925 kb on - strand, within PP_0337at 404.957 kb on + strand, within PP_0337at 404.958 kb on - strand, within PP_0337at 404.958 kb on - strand, within PP_0337at 404.958 kb on - strand, within PP_0337at 405.434 kb on + strand, within PP_0337at 405.497 kb on + strand, within PP_0337at 405.522 kb on + strand, within PP_0337at 405.523 kb on - strand, within PP_0337at 405.716 kb on + strand, within PP_0337at 405.716 kb on + strand, within PP_0337at 405.717 kb on - strand, within PP_0337at 405.770 kb on + strand, within PP_0337at 405.771 kb on - strand, within PP_0337at 405.783 kb on - strand, within PP_0337at 405.783 kb on - strand, within PP_0337at 405.831 kb on - strandat 405.932 kb on + strandat 405.933 kb on - strandat 406.001 kb on - strandat 406.001 kb on - strandat 406.305 kb on + strandat 406.305 kb on + strandat 406.365 kb on + strandat 406.779 kb on + strand, within PP_0338at 406.779 kb on + strand, within PP_0338

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Per-strain Table

Position Strand Gene LocusTag Fraction pH 5
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402,412 + PP_0335 0.82 -0.7
402,412 + PP_0335 0.82 -0.3
402,412 + PP_0335 0.82 +0.9
402,412 + PP_0335 0.82 +1.5
402,412 + PP_0335 0.82 -0.3
402,413 - PP_0335 0.82 +0.7
402,413 - PP_0335 0.82 +2.3
402,413 - PP_0335 0.82 -1.5
402,413 - PP_0335 0.82 +1.6
402,534 + -0.1
402,608 + PP_0336 0.12 +0.8
402,608 + PP_0336 0.12 +1.4
402,621 - PP_0336 0.14 +1.8
402,635 + PP_0336 0.16 +0.9
402,755 + PP_0336 0.34 -1.5
402,755 + PP_0336 0.34 -2.5
402,756 - PP_0336 0.34 +3.3
402,756 - PP_0336 0.34 -0.8
402,756 - PP_0336 0.34 +0.1
402,852 - PP_0336 0.48 +0.8
402,926 + PP_0336 0.59 -0.4
402,926 + PP_0336 0.59 +1.8
402,926 + PP_0336 0.59 -0.3
402,926 + PP_0336 0.59 -1.3
402,926 + PP_0336 0.59 +1.2
402,927 - PP_0336 0.59 -0.1
402,927 - PP_0336 0.59 +1.1
402,930 + PP_0336 0.60 -1.9
402,930 + PP_0336 0.60 -2.5
402,930 + PP_0336 0.60 +0.0
402,930 + PP_0336 0.60 -2.9
402,930 + PP_0336 0.60 +0.4
403,094 + PP_0336 0.84 +2.0
403,094 + PP_0336 0.84 -1.7
403,095 - PP_0336 0.85 -3.8
403,095 - PP_0336 0.85 +0.9
403,095 - PP_0336 0.85 -0.2
403,216 - -0.7
403,267 + +4.0
403,268 - -1.1
403,268 - +2.7
403,268 - -1.3
403,340 + +0.6
403,340 + +0.3
403,340 + +0.4
403,340 + -0.2
403,340 + -0.6
403,341 - +0.3
403,341 - -0.2
403,343 - +2.6
403,343 - -1.8
403,356 + +2.1
403,356 + -2.0
403,389 - +0.3
403,442 + -0.7
403,641 + PP_0337 0.10 +0.1
403,874 - PP_0337 0.19 -1.4
403,874 - PP_0337 0.19 -2.1
403,874 - PP_0337 0.19 +1.5
403,874 - PP_0337 0.19 +3.3
404,087 + PP_0337 0.27 -0.4
404,087 + PP_0337 0.27 +1.9
404,088 - PP_0337 0.27 +0.9
404,088 - PP_0337 0.27 +0.2
404,088 - PP_0337 0.27 -0.7
404,150 + PP_0337 0.29 +2.0
404,150 + PP_0337 0.29 +2.5
404,151 - PP_0337 0.29 +0.3
404,189 - PP_0337 0.31 -1.1
404,199 + PP_0337 0.31 +0.3
404,651 + PP_0337 0.48 -0.5
404,651 + PP_0337 0.48 +2.3
404,652 - PP_0337 0.48 +0.4
404,705 + PP_0337 0.50 +0.3
404,717 + PP_0337 0.50 -3.3
404,717 + PP_0337 0.50 -3.6
404,717 + PP_0337 0.50 -0.3
404,717 + PP_0337 0.50 +2.3
404,718 - PP_0337 0.50 +2.0
404,718 - PP_0337 0.50 +1.2
404,718 - PP_0337 0.50 -0.1
404,745 - PP_0337 0.51 -2.3
404,775 - PP_0337 0.52 -1.1
404,924 + PP_0337 0.58 +1.1
404,924 + PP_0337 0.58 -0.9
404,925 - PP_0337 0.58 +1.3
404,925 - PP_0337 0.58 -1.7
404,957 + PP_0337 0.59 +2.6
404,958 - PP_0337 0.59 -2.7
404,958 - PP_0337 0.59 +1.3
404,958 - PP_0337 0.59 +0.9
405,434 + PP_0337 0.77 -2.0
405,497 + PP_0337 0.79 -1.1
405,522 + PP_0337 0.80 +2.2
405,523 - PP_0337 0.80 +0.3
405,716 + PP_0337 0.87 +0.5
405,716 + PP_0337 0.87 +2.7
405,717 - PP_0337 0.87 -1.7
405,770 + PP_0337 0.89 +0.7
405,771 - PP_0337 0.89 -0.4
405,783 - PP_0337 0.90 -4.1
405,783 - PP_0337 0.90 -4.3
405,831 - -1.9
405,932 + -0.4
405,933 - +1.5
406,001 - +0.2
406,001 - +0.3
406,305 + -2.3
406,305 + -0.6
406,365 + +0.3
406,779 + PP_0338 0.25 +0.3
406,779 + PP_0338 0.25 +0.3

Or see this region's nucleotide sequence