Experiment: pH 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0334 and PP_0335 are separated by 428 nucleotides PP_0335 and PP_0336 are separated by 3 nucleotides PP_0336 and PP_0337 are separated by 168 nucleotides
PP_0334: PP_0334 - transposase, at 400,415 to 401,473
_0334
PP_0335: PP_0335 - Glutathione S-transferase family protein, at 401,902 to 402,525
_0335
PP_0336: PP_0336 - Peptide methionine sulfoxide reductase MsrA, at 402,529 to 403,197
_0336
PP_0337: PP_0337 - Sensory box protein, at 403,366 to 406,056
_0337
Position (kb) 401
402
403 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 401.662 kb on + strand at 401.662 kb on + strand at 401.662 kb on + strand at 401.662 kb on + strand at 401.666 kb on + strand at 401.684 kb on + strand at 401.684 kb on + strand at 401.684 kb on + strand at 401.684 kb on + strand at 401.684 kb on + strand at 401.702 kb on + strand at 401.702 kb on + strand at 401.703 kb on - strand at 401.723 kb on + strand at 401.727 kb on + strand at 401.727 kb on + strand at 401.727 kb on + strand at 401.727 kb on + strand at 401.728 kb on - strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.749 kb on - strand at 401.749 kb on - strand at 401.752 kb on + strand at 401.752 kb on + strand at 401.753 kb on - strand at 401.753 kb on - strand at 401.753 kb on - strand at 401.753 kb on - strand at 401.780 kb on + strand at 401.780 kb on + strand at 401.780 kb on + strand at 401.781 kb on - strand at 401.781 kb on - strand at 401.781 kb on - strand at 401.781 kb on - strand at 401.849 kb on + strand at 401.850 kb on - strand at 401.873 kb on + strand at 401.873 kb on + strand at 401.954 kb on + strand at 401.955 kb on - strand at 401.955 kb on - strand at 402.018 kb on - strand, within PP_0335 at 402.180 kb on - strand, within PP_0335 at 402.223 kb on + strand, within PP_0335 at 402.224 kb on - strand, within PP_0335 at 402.412 kb on + strand, within PP_0335 at 402.412 kb on + strand, within PP_0335 at 402.412 kb on + strand, within PP_0335 at 402.412 kb on + strand, within PP_0335 at 402.412 kb on + strand, within PP_0335 at 402.413 kb on - strand, within PP_0335 at 402.413 kb on - strand, within PP_0335 at 402.413 kb on - strand, within PP_0335 at 402.413 kb on - strand, within PP_0335 at 402.534 kb on + strand at 402.608 kb on + strand, within PP_0336 at 402.608 kb on + strand, within PP_0336 at 402.621 kb on - strand, within PP_0336 at 402.635 kb on + strand, within PP_0336 at 402.755 kb on + strand, within PP_0336 at 402.755 kb on + strand, within PP_0336 at 402.756 kb on - strand, within PP_0336 at 402.756 kb on - strand, within PP_0336 at 402.756 kb on - strand, within PP_0336 at 402.852 kb on - strand, within PP_0336 at 402.926 kb on + strand, within PP_0336 at 402.926 kb on + strand, within PP_0336 at 402.926 kb on + strand, within PP_0336 at 402.926 kb on + strand, within PP_0336 at 402.926 kb on + strand, within PP_0336 at 402.927 kb on - strand, within PP_0336 at 402.927 kb on - strand, within PP_0336 at 402.930 kb on + strand, within PP_0336 at 402.930 kb on + strand, within PP_0336 at 402.930 kb on + strand, within PP_0336 at 402.930 kb on + strand, within PP_0336 at 402.930 kb on + strand, within PP_0336 at 403.094 kb on + strand, within PP_0336 at 403.094 kb on + strand, within PP_0336 at 403.095 kb on - strand, within PP_0336 at 403.095 kb on - strand, within PP_0336 at 403.095 kb on - strand, within PP_0336 at 403.216 kb on - strand at 403.267 kb on + strand at 403.268 kb on - strand at 403.268 kb on - strand at 403.268 kb on - strand at 403.340 kb on + strand at 403.340 kb on + strand at 403.340 kb on + strand at 403.340 kb on + strand at 403.340 kb on + strand at 403.341 kb on - strand at 403.341 kb on - strand at 403.343 kb on - strand at 403.343 kb on - strand at 403.356 kb on + strand at 403.356 kb on + strand at 403.389 kb on - strand at 403.442 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH 5 remove 401,662 + -0.2 401,662 + -0.9 401,662 + +0.3 401,662 + -0.4 401,666 + +0.3 401,684 + -1.9 401,684 + -0.9 401,684 + +3.4 401,684 + -0.8 401,684 + +1.3 401,702 + +0.6 401,702 + -0.9 401,703 - +0.3 401,723 + +3.4 401,727 + +0.3 401,727 + +1.6 401,727 + +0.2 401,727 + +0.3 401,728 - -3.3 401,748 + -0.5 401,748 + +2.2 401,748 + -0.3 401,748 + +1.7 401,748 + +1.3 401,748 + -0.5 401,748 + -0.8 401,748 + +0.8 401,749 - -1.3 401,749 - +2.1 401,752 + +1.0 401,752 + -1.0 401,753 - -0.2 401,753 - +0.0 401,753 - -1.5 401,753 - +2.8 401,780 + +1.8 401,780 + -2.3 401,780 + +0.3 401,781 - +3.8 401,781 - +0.3 401,781 - -2.3 401,781 - -0.6 401,849 + +2.5 401,850 - -2.1 401,873 + -0.5 401,873 + +1.4 401,954 + -2.7 401,955 - +3.3 401,955 - -1.3 402,018 - PP_0335 0.19 -0.6 402,180 - PP_0335 0.45 +0.1 402,223 + PP_0335 0.51 -0.6 402,224 - PP_0335 0.52 +2.1 402,412 + PP_0335 0.82 -0.7 402,412 + PP_0335 0.82 -0.3 402,412 + PP_0335 0.82 +0.9 402,412 + PP_0335 0.82 +1.5 402,412 + PP_0335 0.82 -0.3 402,413 - PP_0335 0.82 +0.7 402,413 - PP_0335 0.82 +2.3 402,413 - PP_0335 0.82 -1.5 402,413 - PP_0335 0.82 +1.6 402,534 + -0.1 402,608 + PP_0336 0.12 +0.8 402,608 + PP_0336 0.12 +1.4 402,621 - PP_0336 0.14 +1.8 402,635 + PP_0336 0.16 +0.9 402,755 + PP_0336 0.34 -1.5 402,755 + PP_0336 0.34 -2.5 402,756 - PP_0336 0.34 +3.3 402,756 - PP_0336 0.34 -0.8 402,756 - PP_0336 0.34 +0.1 402,852 - PP_0336 0.48 +0.8 402,926 + PP_0336 0.59 -0.4 402,926 + PP_0336 0.59 +1.8 402,926 + PP_0336 0.59 -0.3 402,926 + PP_0336 0.59 -1.3 402,926 + PP_0336 0.59 +1.2 402,927 - PP_0336 0.59 -0.1 402,927 - PP_0336 0.59 +1.1 402,930 + PP_0336 0.60 -1.9 402,930 + PP_0336 0.60 -2.5 402,930 + PP_0336 0.60 +0.0 402,930 + PP_0336 0.60 -2.9 402,930 + PP_0336 0.60 +0.4 403,094 + PP_0336 0.84 +2.0 403,094 + PP_0336 0.84 -1.7 403,095 - PP_0336 0.85 -3.8 403,095 - PP_0336 0.85 +0.9 403,095 - PP_0336 0.85 -0.2 403,216 - -0.7 403,267 + +4.0 403,268 - -1.1 403,268 - +2.7 403,268 - -1.3 403,340 + +0.6 403,340 + +0.3 403,340 + +0.4 403,340 + -0.2 403,340 + -0.6 403,341 - +0.3 403,341 - -0.2 403,343 - +2.6 403,343 - -1.8 403,356 + +2.1 403,356 + -2.0 403,389 - +0.3 403,442 + -0.7
Or see this region's nucleotide sequence