Experiment: pH 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0332 and PP_0333 are separated by 181 nucleotides PP_0333 and PP_0334 are separated by 149 nucleotides
PP_0332: PP_0332 - putative Acyltransferase, at 398,696 to 399,583
_0332
PP_0333: PP_0333 - conserved exported protein of unknown function, at 399,765 to 400,265
_0333
PP_0334: PP_0334 - transposase, at 400,415 to 401,473
_0334
Position (kb) 399
400
401 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 398.860 kb on + strand, within PP_0332 at 398.900 kb on - strand, within PP_0332 at 399.001 kb on - strand, within PP_0332 at 399.007 kb on - strand, within PP_0332 at 399.061 kb on - strand, within PP_0332 at 399.265 kb on + strand, within PP_0332 at 399.265 kb on + strand, within PP_0332 at 399.266 kb on - strand, within PP_0332 at 399.524 kb on + strand at 399.524 kb on + strand at 399.525 kb on - strand at 399.532 kb on + strand at 399.533 kb on - strand at 399.553 kb on + strand at 399.554 kb on - strand at 399.583 kb on + strand at 399.584 kb on - strand at 399.584 kb on - strand at 399.608 kb on - strand at 399.608 kb on - strand at 399.608 kb on - strand at 399.624 kb on + strand at 399.625 kb on - strand at 399.625 kb on - strand at 399.641 kb on + strand at 399.687 kb on + strand at 399.687 kb on + strand at 399.687 kb on + strand at 399.687 kb on + strand at 399.688 kb on - strand at 399.696 kb on + strand at 399.697 kb on - strand at 399.697 kb on - strand at 399.716 kb on + strand at 399.717 kb on - strand at 399.735 kb on - strand at 399.778 kb on + strand at 399.827 kb on + strand, within PP_0333 at 399.828 kb on - strand, within PP_0333 at 399.828 kb on - strand, within PP_0333 at 399.828 kb on - strand, within PP_0333 at 399.828 kb on - strand, within PP_0333 at 399.831 kb on + strand, within PP_0333 at 399.831 kb on + strand, within PP_0333 at 399.841 kb on - strand, within PP_0333 at 399.848 kb on + strand, within PP_0333 at 399.849 kb on - strand, within PP_0333 at 400.005 kb on + strand, within PP_0333 at 400.005 kb on + strand, within PP_0333 at 400.006 kb on - strand, within PP_0333 at 400.173 kb on + strand, within PP_0333 at 400.282 kb on + strand at 400.282 kb on + strand at 400.283 kb on - strand at 400.283 kb on - strand at 400.283 kb on - strand at 400.290 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH 5 remove 398,860 + PP_0332 0.18 +0.6 398,900 - PP_0332 0.23 -0.1 399,001 - PP_0332 0.34 +1.3 399,007 - PP_0332 0.35 +0.7 399,061 - PP_0332 0.41 -1.1 399,265 + PP_0332 0.64 +0.3 399,265 + PP_0332 0.64 -2.4 399,266 - PP_0332 0.64 -2.9 399,524 + -3.0 399,524 + +0.3 399,525 - +0.4 399,532 + -0.7 399,533 - +1.3 399,553 + -3.6 399,554 - +0.8 399,583 + -0.6 399,584 - -1.7 399,584 - +0.3 399,608 - +0.3 399,608 - -2.3 399,608 - +0.0 399,624 + +0.5 399,625 - -1.4 399,625 - -0.7 399,641 + +0.3 399,687 + -0.6 399,687 + -0.3 399,687 + -2.9 399,687 + +0.7 399,688 - -3.8 399,696 + +1.6 399,697 - -0.6 399,697 - +0.3 399,716 + -3.3 399,717 - +1.0 399,735 - -1.5 399,778 + -2.1 399,827 + PP_0333 0.12 -2.7 399,828 - PP_0333 0.13 -2.7 399,828 - PP_0333 0.13 +1.1 399,828 - PP_0333 0.13 +0.3 399,828 - PP_0333 0.13 +0.8 399,831 + PP_0333 0.13 -1.3 399,831 + PP_0333 0.13 +0.8 399,841 - PP_0333 0.15 -1.2 399,848 + PP_0333 0.17 +0.3 399,849 - PP_0333 0.17 -0.5 400,005 + PP_0333 0.48 +3.1 400,005 + PP_0333 0.48 -0.9 400,006 - PP_0333 0.48 -0.2 400,173 + PP_0333 0.81 +2.3 400,282 + +0.4 400,282 + +1.6 400,283 - -0.4 400,283 - -0.1 400,283 - -0.2 400,290 - -3.5
Or see this region's nucleotide sequence