Experiment: pH 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0235 and PP_0236 are separated by 219 nucleotides PP_0236 and PP_0237 are separated by 85 nucleotides PP_0237 and PP_0238 are separated by 59 nucleotides
PP_0235: PP_0235 - Peroxidase, at 290,082 to 290,720
_0235
PP_0236: PP_0236 - NAD(P)H-dependent FMN reductase subunit, at 290,940 to 291,533
_0236
PP_0237: PP_0237 - aliphatic sulfonate ABC transporter - periplasmic binding protein / transport of isethionate, at 291,619 to 292,584
_0237
PP_0238: PP_0238 - alkanesulfonate monooxygenase, at 292,644 to 293,792
_0238
Position (kb) 291
292
293 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 290.688 kb on + strand at 290.689 kb on - strand at 290.745 kb on - strand at 290.903 kb on + strand at 290.904 kb on - strand at 291.294 kb on + strand, within PP_0236 at 291.406 kb on + strand, within PP_0236 at 291.407 kb on - strand, within PP_0236 at 291.407 kb on - strand, within PP_0236 at 291.558 kb on + strand at 291.794 kb on + strand, within PP_0237 at 291.795 kb on - strand, within PP_0237 at 291.795 kb on - strand, within PP_0237 at 291.925 kb on + strand, within PP_0237 at 291.925 kb on + strand, within PP_0237 at 291.926 kb on - strand, within PP_0237 at 291.926 kb on - strand, within PP_0237 at 291.926 kb on - strand, within PP_0237 at 291.926 kb on - strand, within PP_0237 at 291.926 kb on - strand, within PP_0237 at 291.963 kb on + strand, within PP_0237 at 291.963 kb on + strand, within PP_0237 at 292.051 kb on + strand, within PP_0237 at 292.051 kb on + strand, within PP_0237 at 292.051 kb on + strand, within PP_0237 at 292.052 kb on - strand, within PP_0237 at 292.052 kb on - strand, within PP_0237 at 292.090 kb on + strand, within PP_0237 at 292.111 kb on + strand, within PP_0237 at 292.112 kb on - strand, within PP_0237 at 292.112 kb on - strand, within PP_0237 at 292.261 kb on + strand, within PP_0237 at 292.279 kb on + strand, within PP_0237 at 292.280 kb on - strand, within PP_0237 at 292.280 kb on - strand, within PP_0237 at 292.280 kb on - strand, within PP_0237 at 292.439 kb on - strand, within PP_0237 at 292.518 kb on - strand at 292.652 kb on + strand at 292.692 kb on + strand at 292.693 kb on - strand at 292.693 kb on - strand at 292.693 kb on - strand at 292.734 kb on + strand at 292.870 kb on + strand, within PP_0238 at 292.871 kb on - strand, within PP_0238 at 293.113 kb on + strand, within PP_0238 at 293.114 kb on - strand, within PP_0238 at 293.133 kb on + strand, within PP_0238 at 293.167 kb on - strand, within PP_0238 at 293.309 kb on - strand, within PP_0238
Per-strain Table
Position Strand Gene LocusTag Fraction pH 5 remove 290,688 + +0.3 290,689 - +0.6 290,745 - -0.9 290,903 + -1.1 290,904 - -0.6 291,294 + PP_0236 0.60 -0.3 291,406 + PP_0236 0.78 +0.3 291,407 - PP_0236 0.79 +1.6 291,407 - PP_0236 0.79 +1.3 291,558 + +0.8 291,794 + PP_0237 0.18 +1.0 291,795 - PP_0237 0.18 -0.4 291,795 - PP_0237 0.18 -3.4 291,925 + PP_0237 0.32 -0.2 291,925 + PP_0237 0.32 +0.5 291,926 - PP_0237 0.32 -1.8 291,926 - PP_0237 0.32 -1.1 291,926 - PP_0237 0.32 -1.9 291,926 - PP_0237 0.32 +1.3 291,926 - PP_0237 0.32 -3.6 291,963 + PP_0237 0.36 -3.6 291,963 + PP_0237 0.36 -0.7 292,051 + PP_0237 0.45 -2.7 292,051 + PP_0237 0.45 +0.5 292,051 + PP_0237 0.45 -2.8 292,052 - PP_0237 0.45 +0.3 292,052 - PP_0237 0.45 -1.5 292,090 + PP_0237 0.49 -0.4 292,111 + PP_0237 0.51 -0.1 292,112 - PP_0237 0.51 +4.0 292,112 - PP_0237 0.51 -0.7 292,261 + PP_0237 0.66 +1.7 292,279 + PP_0237 0.68 -0.5 292,280 - PP_0237 0.68 -1.1 292,280 - PP_0237 0.68 +0.1 292,280 - PP_0237 0.68 -2.7 292,439 - PP_0237 0.85 -2.0 292,518 - -2.1 292,652 + -0.9 292,692 + -1.2 292,693 - +2.7 292,693 - +2.7 292,693 - +0.5 292,734 + +0.5 292,870 + PP_0238 0.20 -1.4 292,871 - PP_0238 0.20 +0.9 293,113 + PP_0238 0.41 -3.3 293,114 - PP_0238 0.41 +1.5 293,133 + PP_0238 0.43 -2.3 293,167 - PP_0238 0.46 +0.0 293,309 - PP_0238 0.58 -1.5
Or see this region's nucleotide sequence