Strain Fitness in Pseudomonas putida KT2440 around PP_0201

Experiment: pH 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0200 and PP_0201 are separated by 65 nucleotidesPP_0201 and PP_5432 are separated by 61 nucleotidesPP_5432 and PP_5433 are separated by 69 nucleotides PP_0200: PP_0200 - putative membrane bound peptidase, nefD, at 249,856 to 251,202 _0200 PP_0201: PP_0201 - conserved protein of unknown function, at 251,268 to 251,759 _0201 PP_5432: PP_5432 - conserved protein of unknown function, at 251,821 to 252,063 _5432 PP_5433: PP_5433 - putative NADH:ubiquinone oxidoreductase subunit 2, at 252,133 to 252,771 _5433 Position (kb) 251 252Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 250.341 kb on - strand, within PP_0200at 250.341 kb on - strand, within PP_0200at 250.341 kb on - strand, within PP_0200at 250.362 kb on + strand, within PP_0200at 250.362 kb on + strandat 250.363 kb on - strand, within PP_0200at 250.363 kb on - strand, within PP_0200at 250.451 kb on - strand, within PP_0200at 250.724 kb on + strand, within PP_0200at 250.785 kb on + strand, within PP_0200at 250.870 kb on - strand, within PP_0200at 250.870 kb on - strand, within PP_0200at 250.870 kb on - strand, within PP_0200at 250.887 kb on + strand, within PP_0200at 250.887 kb on + strand, within PP_0200at 250.888 kb on - strand, within PP_0200at 250.888 kb on - strand, within PP_0200at 250.889 kb on + strand, within PP_0200at 250.889 kb on + strand, within PP_0200at 250.889 kb on + strand, within PP_0200at 250.889 kb on + strand, within PP_0200at 250.889 kb on + strand, within PP_0200at 250.889 kb on + strand, within PP_0200at 250.889 kb on + strand, within PP_0200at 250.889 kb on + strand, within PP_0200at 250.889 kb on + strand, within PP_0200at 250.890 kb on - strand, within PP_0200at 250.890 kb on - strand, within PP_0200at 250.890 kb on - strand, within PP_0200at 250.931 kb on + strand, within PP_0200at 250.931 kb on + strand, within PP_0200at 250.932 kb on - strand, within PP_0200at 250.932 kb on - strand, within PP_0200at 251.073 kb on - strandat 251.226 kb on - strandat 251.229 kb on - strandat 251.352 kb on + strand, within PP_0201at 251.352 kb on + strand, within PP_0201at 251.353 kb on - strand, within PP_0201at 251.353 kb on - strand, within PP_0201at 251.466 kb on + strand, within PP_0201at 251.466 kb on + strand, within PP_0201at 251.466 kb on + strand, within PP_0201at 251.466 kb on + strand, within PP_0201at 251.466 kb on + strand, within PP_0201at 251.466 kb on + strand, within PP_0201at 251.467 kb on - strand, within PP_0201at 251.467 kb on - strand, within PP_0201at 251.467 kb on - strand, within PP_0201at 251.467 kb on - strand, within PP_0201at 251.614 kb on - strand, within PP_0201at 251.614 kb on - strand, within PP_0201at 251.664 kb on + strand, within PP_0201at 251.665 kb on - strand, within PP_0201at 251.715 kb on + strandat 251.715 kb on + strandat 251.716 kb on - strandat 251.716 kb on - strandat 251.716 kb on - strandat 251.716 kb on - strandat 251.889 kb on + strand, within PP_5432at 252.101 kb on + strandat 252.101 kb on + strandat 252.101 kb on + strandat 252.102 kb on - strandat 252.102 kb on - strandat 252.102 kb on - strandat 252.102 kb on - strandat 252.119 kb on - strandat 252.199 kb on + strand, within PP_5433at 252.199 kb on + strand, within PP_5433at 252.200 kb on - strand, within PP_5433at 252.205 kb on + strand, within PP_5433at 252.205 kb on + strand, within PP_5433at 252.205 kb on + strand, within PP_5433at 252.206 kb on - strand, within PP_5433at 252.206 kb on - strand, within PP_5433at 252.253 kb on + strand, within PP_5433at 252.375 kb on + strand, within PP_5433at 252.376 kb on - strand, within PP_5433at 252.376 kb on - strand, within PP_5433at 252.419 kb on - strand, within PP_5433at 252.433 kb on + strand, within PP_5433at 252.433 kb on + strand, within PP_5433at 252.433 kb on + strand, within PP_5433at 252.433 kb on + strand, within PP_5433at 252.434 kb on - strand, within PP_5433at 252.622 kb on + strand, within PP_5433at 252.623 kb on - strand, within PP_5433at 252.623 kb on - strand, within PP_5433at 252.623 kb on - strand, within PP_5433at 252.666 kb on + strand, within PP_5433at 252.703 kb on + strand, within PP_5433at 252.703 kb on + strand, within PP_5433at 252.704 kb on - strand, within PP_5433at 252.704 kb on - strand, within PP_5433at 252.726 kb on + strandat 252.726 kb on + strandat 252.727 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pH 5
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250,341 - PP_0200 0.36 -4.3
250,341 - PP_0200 0.36 +0.4
250,341 - PP_0200 0.36 +0.3
250,362 + PP_0200 0.38 -2.1
250,362 + -0.7
250,363 - PP_0200 0.38 -4.3
250,363 - PP_0200 0.38 -3.7
250,451 - PP_0200 0.44 +0.1
250,724 + PP_0200 0.64 +1.6
250,785 + PP_0200 0.69 +1.1
250,870 - PP_0200 0.75 -1.0
250,870 - PP_0200 0.75 -0.9
250,870 - PP_0200 0.75 +0.1
250,887 + PP_0200 0.77 -2.9
250,887 + PP_0200 0.77 -2.1
250,888 - PP_0200 0.77 +0.6
250,888 - PP_0200 0.77 -1.4
250,889 + PP_0200 0.77 +1.6
250,889 + PP_0200 0.77 -0.7
250,889 + PP_0200 0.77 -2.9
250,889 + PP_0200 0.77 +0.3
250,889 + PP_0200 0.77 +2.2
250,889 + PP_0200 0.77 -2.7
250,889 + PP_0200 0.77 +0.3
250,889 + PP_0200 0.77 -3.1
250,889 + PP_0200 0.77 +0.7
250,890 - PP_0200 0.77 +0.3
250,890 - PP_0200 0.77 -0.2
250,890 - PP_0200 0.77 +0.5
250,931 + PP_0200 0.80 -2.1
250,931 + PP_0200 0.80 +3.7
250,932 - PP_0200 0.80 -0.2
250,932 - PP_0200 0.80 -0.0
251,073 - -3.4
251,226 - +1.9
251,229 - +0.5
251,352 + PP_0201 0.17 -0.3
251,352 + PP_0201 0.17 +0.5
251,353 - PP_0201 0.17 +1.7
251,353 - PP_0201 0.17 -0.4
251,466 + PP_0201 0.40 -0.7
251,466 + PP_0201 0.40 -1.3
251,466 + PP_0201 0.40 -2.8
251,466 + PP_0201 0.40 +0.3
251,466 + PP_0201 0.40 -0.4
251,466 + PP_0201 0.40 -2.0
251,467 - PP_0201 0.40 +0.3
251,467 - PP_0201 0.40 -2.7
251,467 - PP_0201 0.40 -1.6
251,467 - PP_0201 0.40 -1.0
251,614 - PP_0201 0.70 -0.1
251,614 - PP_0201 0.70 -2.3
251,664 + PP_0201 0.80 -1.2
251,665 - PP_0201 0.81 -0.2
251,715 + -0.2
251,715 + +0.9
251,716 - +0.3
251,716 - +0.3
251,716 - -1.3
251,716 - +1.3
251,889 + PP_5432 0.28 +0.3
252,101 + -0.0
252,101 + -1.6
252,101 + +0.6
252,102 - +2.3
252,102 - -1.7
252,102 - +0.4
252,102 - -0.9
252,119 - -2.3
252,199 + PP_5433 0.10 +0.3
252,199 + PP_5433 0.10 -0.7
252,200 - PP_5433 0.10 -0.6
252,205 + PP_5433 0.11 +0.7
252,205 + PP_5433 0.11 -0.2
252,205 + PP_5433 0.11 -0.9
252,206 - PP_5433 0.11 -4.1
252,206 - PP_5433 0.11 -0.4
252,253 + PP_5433 0.19 +0.9
252,375 + PP_5433 0.38 +0.3
252,376 - PP_5433 0.38 +2.0
252,376 - PP_5433 0.38 -0.8
252,419 - PP_5433 0.45 +2.8
252,433 + PP_5433 0.47 +0.0
252,433 + PP_5433 0.47 +0.3
252,433 + PP_5433 0.47 -1.2
252,433 + PP_5433 0.47 -1.1
252,434 - PP_5433 0.47 -0.3
252,622 + PP_5433 0.77 +0.3
252,623 - PP_5433 0.77 +0.3
252,623 - PP_5433 0.77 +1.9
252,623 - PP_5433 0.77 +1.8
252,666 + PP_5433 0.83 +1.8
252,703 + PP_5433 0.89 -0.9
252,703 + PP_5433 0.89 +0.4
252,704 - PP_5433 0.89 -2.3
252,704 - PP_5433 0.89 -0.7
252,726 + +0.2
252,726 + +0.7
252,727 - -1.3

Or see this region's nucleotide sequence