Experiment: Mandelic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3795 and Atu3796 overlap by 4 nucleotides Atu3796 and Atu3797 overlap by 1 nucleotides
Atu3795: Atu3795 - AcrB/AcrD/AcrF family protein, at 888,269 to 891,340
Atu3795
Atu3796: Atu3796 - efflux protein, at 891,337 to 892,422
Atu3796
Atu3797: Atu3797 - HlyD family secretion protein, at 892,422 to 893,498
Atu3797
Position (kb) 891
892
893 Strain fitness (log2 ratio) -1
0
1
2 at 890.613 kb on - strand, within Atu3795 at 890.667 kb on + strand, within Atu3795 at 890.712 kb on + strand, within Atu3795 at 890.776 kb on + strand, within Atu3795 at 890.878 kb on + strand, within Atu3795 at 890.900 kb on + strand, within Atu3795 at 890.908 kb on - strand, within Atu3795 at 890.908 kb on - strand, within Atu3795 at 890.908 kb on - strand, within Atu3795 at 890.921 kb on - strand, within Atu3795 at 890.978 kb on + strand, within Atu3795 at 890.981 kb on - strand, within Atu3795 at 891.061 kb on + strand at 891.075 kb on + strand at 891.077 kb on - strand at 891.079 kb on + strand at 891.087 kb on - strand at 891.087 kb on - strand at 891.110 kb on - strand at 891.145 kb on + strand at 891.191 kb on + strand at 891.194 kb on - strand at 891.196 kb on + strand at 891.199 kb on - strand at 891.274 kb on - strand at 891.292 kb on - strand at 891.359 kb on + strand at 891.378 kb on + strand at 891.378 kb on + strand at 891.378 kb on + strand at 891.385 kb on + strand at 891.446 kb on + strand, within Atu3796 at 891.503 kb on - strand, within Atu3796 at 891.629 kb on - strand, within Atu3796 at 891.716 kb on - strand, within Atu3796 at 891.758 kb on - strand, within Atu3796 at 891.798 kb on + strand, within Atu3796 at 891.807 kb on - strand, within Atu3796 at 891.827 kb on - strand, within Atu3796 at 891.901 kb on + strand, within Atu3796 at 891.921 kb on + strand, within Atu3796 at 891.928 kb on + strand, within Atu3796 at 891.959 kb on + strand, within Atu3796 at 892.002 kb on + strand, within Atu3796 at 892.005 kb on - strand, within Atu3796 at 892.055 kb on + strand, within Atu3796 at 892.055 kb on + strand, within Atu3796 at 892.063 kb on - strand, within Atu3796 at 892.073 kb on - strand, within Atu3796 at 892.073 kb on - strand, within Atu3796 at 892.186 kb on - strand, within Atu3796 at 892.255 kb on - strand, within Atu3796 at 892.258 kb on + strand, within Atu3796 at 892.300 kb on - strand, within Atu3796 at 892.408 kb on + strand at 892.509 kb on - strand at 892.514 kb on + strand at 892.517 kb on - strand at 892.556 kb on + strand, within Atu3797 at 892.559 kb on - strand, within Atu3797 at 892.635 kb on - strand, within Atu3797 at 892.729 kb on + strand, within Atu3797 at 892.729 kb on + strand, within Atu3797 at 892.729 kb on + strand, within Atu3797 at 892.737 kb on - strand, within Atu3797 at 892.737 kb on - strand, within Atu3797 at 892.747 kb on + strand, within Atu3797 at 892.782 kb on + strand, within Atu3797 at 892.995 kb on - strand, within Atu3797 at 892.999 kb on + strand, within Atu3797 at 892.999 kb on + strand, within Atu3797 at 892.999 kb on + strand, within Atu3797 at 892.999 kb on + strand, within Atu3797 at 892.999 kb on + strand, within Atu3797 at 892.999 kb on + strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.034 kb on + strand, within Atu3797 at 893.042 kb on - strand, within Atu3797 at 893.042 kb on - strand, within Atu3797 at 893.098 kb on - strand, within Atu3797 at 893.116 kb on + strand, within Atu3797 at 893.313 kb on + strand, within Atu3797 at 893.313 kb on + strand, within Atu3797 at 893.331 kb on - strand, within Atu3797 at 893.394 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mandelic 5 mM remove 890,613 - Atu3795 0.76 +0.2 890,667 + Atu3795 0.78 -1.6 890,712 + Atu3795 0.80 +0.2 890,776 + Atu3795 0.82 +0.1 890,878 + Atu3795 0.85 +0.2 890,900 + Atu3795 0.86 +0.7 890,908 - Atu3795 0.86 -0.3 890,908 - Atu3795 0.86 -0.2 890,908 - Atu3795 0.86 +0.0 890,921 - Atu3795 0.86 -0.2 890,978 + Atu3795 0.88 +0.5 890,981 - Atu3795 0.88 +0.4 891,061 + +0.7 891,075 + -0.2 891,077 - -0.1 891,079 + +0.2 891,087 - +1.1 891,087 - -0.2 891,110 - +1.8 891,145 + +1.0 891,191 + -0.2 891,194 - +0.1 891,196 + -0.5 891,199 - +0.4 891,274 - -0.1 891,292 - -0.4 891,359 + +0.1 891,378 + -0.2 891,378 + +0.5 891,378 + +1.0 891,385 + -0.5 891,446 + Atu3796 0.10 +0.1 891,503 - Atu3796 0.15 -0.6 891,629 - Atu3796 0.27 +0.2 891,716 - Atu3796 0.35 +0.9 891,758 - Atu3796 0.39 +1.0 891,798 + Atu3796 0.42 -0.1 891,807 - Atu3796 0.43 -0.7 891,827 - Atu3796 0.45 +0.0 891,901 + Atu3796 0.52 -0.2 891,921 + Atu3796 0.54 -0.8 891,928 + Atu3796 0.54 -0.0 891,959 + Atu3796 0.57 -0.5 892,002 + Atu3796 0.61 -0.2 892,005 - Atu3796 0.62 -1.4 892,055 + Atu3796 0.66 -0.1 892,055 + Atu3796 0.66 +0.2 892,063 - Atu3796 0.67 -0.0 892,073 - Atu3796 0.68 +0.4 892,073 - Atu3796 0.68 -0.5 892,186 - Atu3796 0.78 +0.6 892,255 - Atu3796 0.85 -0.3 892,258 + Atu3796 0.85 -0.1 892,300 - Atu3796 0.89 +0.2 892,408 + +0.0 892,509 - -0.2 892,514 + -0.3 892,517 - -0.1 892,556 + Atu3797 0.12 -1.2 892,559 - Atu3797 0.13 -0.2 892,635 - Atu3797 0.20 -0.2 892,729 + Atu3797 0.29 +1.6 892,729 + Atu3797 0.29 +0.0 892,729 + Atu3797 0.29 +0.2 892,737 - Atu3797 0.29 -0.0 892,737 - Atu3797 0.29 -0.1 892,747 + Atu3797 0.30 -0.5 892,782 + Atu3797 0.33 +0.2 892,995 - Atu3797 0.53 -0.1 892,999 + Atu3797 0.54 -0.0 892,999 + Atu3797 0.54 +0.3 892,999 + Atu3797 0.54 -1.1 892,999 + Atu3797 0.54 +1.3 892,999 + Atu3797 0.54 +0.6 892,999 + Atu3797 0.54 +0.3 893,007 - Atu3797 0.54 +0.1 893,007 - Atu3797 0.54 -0.8 893,007 - Atu3797 0.54 -0.0 893,007 - Atu3797 0.54 +0.3 893,007 - Atu3797 0.54 +0.5 893,007 - Atu3797 0.54 +0.3 893,007 - Atu3797 0.54 +0.5 893,034 + Atu3797 0.57 +0.5 893,042 - Atu3797 0.58 +0.4 893,042 - Atu3797 0.58 +0.6 893,098 - Atu3797 0.63 +0.2 893,116 + Atu3797 0.64 -0.1 893,313 + Atu3797 0.83 -0.5 893,313 + Atu3797 0.83 -0.8 893,331 - Atu3797 0.84 +1.6 893,394 + +0.0
Or see this region's nucleotide sequence