Strain Fitness in Pseudomonas putida KT2440 around PP_5574

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
3,505,332	+		PP_3103	0.71	+2.4
3,505,333	-		PP_3103	0.71	-0.3
3,505,337	+		PP_3103	0.72	-2.9
3,505,337	+		PP_3103	0.72	-0.2
3,505,337	+		PP_3103	0.72	-1.5
3,505,338	-		PP_3103	0.72	-0.6
3,505,338	-		PP_3103	0.72	-2.5
3,505,338	-		PP_3103	0.72	+0.6
3,505,357	+		PP_3103	0.73	+1.1
3,505,542	-				-1.0
3,505,642	+				-0.1
3,505,643	-				-0.2
3,505,689	-				+2.0
3,505,707	+				+0.8
3,505,767	-				-2.3
3,505,770	+				-1.1
3,505,770	+				+0.8
3,505,770	+				-1.6
3,505,771	-				-0.9
3,505,771	-				+0.4
3,505,771	-				+0.0
3,505,771	-				+0.4
3,505,771	-				+0.2
3,505,771	-				+0.0
3,505,862	+				-1.3
3,505,871	+				-2.1
3,505,871	+				+2.0
3,505,872	-				-0.2
3,505,932	-				+1.5
3,505,937	+				-3.5
3,505,938	-				-0.2
3,506,097	-				-0.7
3,506,194	-		PP_5574	0.32	+1.0
3,506,195	+		PP_5574	0.32	+0.3
3,506,216	+		PP_5574	0.42	+1.0
3,506,217	-		PP_5574	0.42	-0.6
3,506,285	+		PP_5574	0.72	+1.8
3,506,285	+		PP_5574	0.72	-0.3
3,506,318	-		PP_5574	0.87	+1.0
3,506,318	-		PP_5574	0.87	+0.2
3,506,335	+				+0.4
3,506,335	+				-0.2
3,506,335	+				-0.7
3,506,336	-				+0.2
3,506,339	+				-0.4
3,506,340	-				+0.6
3,506,376	+				-0.5
3,506,436	-				+1.6
3,506,436	-				+0.2
3,506,494	+				+1.0
3,506,533	+				-0.2
3,506,533	+				-1.2
3,506,568	+				-2.0
3,506,569	-				-1.1
3,506,659	+				-0.4
3,506,659	+				+2.9
3,506,660	-				+0.3
3,506,660	-				+2.0
3,506,744	+				-0.4
3,506,744	+				-2.5
3,506,745	-				-0.6
3,506,745	-				-0.6
3,506,758	+				-0.2
3,506,759	-				-0.1
3,506,774	+				-0.2
3,506,774	+				+0.1
3,506,774	+				-0.4
3,506,774	+				-0.9
3,506,774	+				+0.0
3,506,774	+				+1.3
3,506,774	+				-0.4
3,506,774	+				-1.1
3,506,775	-				-2.5
3,506,785	+		PP_3104	0.11	-1.7
3,506,786	-		PP_3104	0.11	-0.4
3,506,831	+		PP_3104	0.15	+0.5
3,506,831	+				+1.0
3,506,831	+		PP_3104	0.15	-1.7
3,506,892	+		PP_3104	0.22	-0.1
3,506,892	+		PP_3104	0.22	-1.0
3,506,893	-		PP_3104	0.22	+0.0
3,506,893	-		PP_3104	0.22	-1.1
3,506,990	+		PP_3104	0.32	+0.3
3,506,991	-		PP_3104	0.32	-1.3
3,506,993	+		PP_3104	0.32	+0.3
3,507,041	+		PP_3104	0.37	+3.0
3,507,152	+		PP_3104	0.48	-0.4
3,507,152	+		PP_3104	0.48	+0.4
3,507,152	+		PP_3104	0.48	-0.8
3,507,152	+		PP_3104	0.48	-0.3
3,507,153	-		PP_3104	0.49	+0.0
3,507,153	-		PP_3104	0.49	+2.2
3,507,212	-		PP_3104	0.55	+0.2
3,507,212	-		PP_3104	0.55	-0.2
3,507,221	+		PP_3104	0.56	+0.0
3,507,247	+		PP_3104	0.58	-0.5
3,507,247	+		PP_3104	0.58	+2.0
3,507,324	+		PP_3104	0.66	+0.7
3,507,325	-		PP_3104	0.66	-0.2