Strain Fitness in Pseudomonas putida KT2440 around PP_5500

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
2,335,565	-		PP_2052	0.58	-0.1
2,335,565	-		PP_2052	0.58	+0.5
2,335,577	-		PP_2052	0.59	-0.1
2,335,671	+		PP_2052	0.63	-0.4
2,336,077	+		PP_2052	0.82	+1.3
2,336,078	-		PP_2052	0.82	+0.4
2,336,178	+		PP_2052	0.87	+0.2
2,336,197	+		PP_2052	0.88	+0.2
2,336,197	+		PP_2052	0.88	+1.5
2,336,198	-		PP_2052	0.88	+0.3
2,336,198	-		PP_2052	0.88	-0.5
2,336,239	+				-0.8
2,336,589	-		PP_5500	0.26	-0.8
2,336,589	-		PP_5500	0.26	-1.2
2,336,711	+		PP_5500	0.86	-1.4
2,336,712	-		PP_5500	0.86	-0.2
2,336,721	+				+1.2
2,336,721	+				-0.1
2,336,722	-				+2.4
2,336,722	-				+0.2
2,336,833	-				-0.8
2,336,880	+				-1.3
2,336,880	+				+0.4
2,336,950	+		PP_2053	0.33	-1.7
2,336,951	-		PP_2053	0.33	-4.8
2,336,951	-		PP_2053	0.33	+0.5
2,336,951	-		PP_2053	0.33	-1.2
2,336,951	-		PP_2053	0.33	+0.2
2,336,951	-		PP_2053	0.33	-0.5
2,337,073	-		PP_2053	0.74	+1.0
2,337,107	+		PP_2053	0.86	-0.5
2,337,107	+		PP_2053	0.86	+1.8
2,337,107	+		PP_2053	0.86	+0.6
2,337,138	-				+0.6
2,337,245	-				-2.2
2,337,255	+				-0.2
2,337,255	+				-1.4
2,337,400	+		PP_2054	0.26	-1.6
2,337,559	-		PP_2054	0.44	-1.3
2,337,719	-		PP_2054	0.62	-2.2