Strain Fitness in Pseudomonas putida KT2440 around PP_5483

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
2,164,632	+		PP_1920	0.26	-0.8
2,164,723	-		PP_1920	0.33	+0.9
2,164,738	+		PP_1920	0.34	-0.2
2,164,738	+		PP_1920	0.34	-0.1
2,164,739	-		PP_1920	0.35	+0.9
2,164,739	-		PP_1920	0.35	-1.1
2,164,739	-		PP_1920	0.35	+0.9
2,164,852	+		PP_1920	0.44	+0.2
2,164,931	+		PP_1920	0.50	+1.2
2,165,143	-		PP_1920	0.68	-0.1
2,165,232	+		PP_1920	0.75	-0.4
2,165,232	-		PP_1920	0.75	-0.4
2,165,266	+		PP_1920	0.78	+0.7
2,165,344	-		PP_1920	0.84	-0.5
2,165,348	+		PP_1920	0.84	-1.0
2,165,351	-		PP_1920	0.85	-1.8
2,165,351	-		PP_1920	0.85	+1.2
2,165,595	-				-0.2
2,165,785	-		PP_5483	0.33	+1.1
2,165,919	+		PP_5483	0.57	+1.4
2,166,133	+				-0.1
2,166,133	+				-0.2
2,166,158	+				-0.3
2,166,158	+				+1.3
2,166,159	-				+1.9
2,166,159	-				+3.2
2,166,182	+				-3.4
2,166,190	+				+0.5
2,166,191	-				+3.9
2,166,250	+				-0.6
2,166,250	+				-0.8
2,166,278	+				+3.2
2,166,278	+				-0.8
2,166,287	+				+1.9
2,166,288	-				+0.4
2,166,295	+				-0.8
2,166,296	-				-0.4
2,166,314	-				-0.9
2,166,319	-				+1.4
2,166,319	-				-0.1
2,166,380	+				+1.1
2,166,406	+				+0.2
2,166,406	+				-0.8
2,166,457	-				-1.4
2,166,490	-				+1.7
2,166,527	+				+0.8
2,166,528	-				+1.1
2,166,591	-				+0.2
2,166,604	+				-1.5
2,166,605	-				-1.4
2,166,624	+				-2.3
2,166,625	-				-2.8
2,166,625	-				+3.9
2,166,726	-				+0.3
2,166,733	-				-1.3
2,166,739	+				+0.1
2,166,739	+				-0.0
2,166,739	+				-0.2
2,166,746	+				+1.6
2,166,746	+				+1.2
2,166,747	-				+1.1
2,166,747	-				+1.0
2,166,821	+				-0.4
2,166,832	+				+0.6
2,166,832	+				+0.5
2,166,832	+				-0.0
2,166,832	+				-2.3
2,166,833	-				+1.1
2,166,833	-				-2.6
2,166,838	+				+1.8
2,166,942	+				-0.8
2,166,942	+				+1.2
2,166,943	-				+1.6
2,166,943	-				+2.7
2,166,946	+				-1.9
2,167,005	-				+1.6
2,167,041	+				+0.0
2,167,042	-				-0.6
2,167,042	-				-1.2
2,167,049	-				-1.2
2,167,049	-				-0.2