Strain Fitness in Pseudomonas putida KT2440 around PP_5471

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
1,677,606	-				+0.3
1,677,666	+				+1.9
1,677,666	+				+1.1
1,677,681	-				+3.0
1,677,681	-				-0.6
1,677,681	-				-0.0
1,677,706	-				-1.4
1,677,706	-				-1.8
1,677,750	+				-1.6
1,677,750	+				+0.3
1,677,750	+				-0.6
1,677,750	+				+0.7
1,677,751	-				-0.1
1,677,751	-				-0.1
1,677,751	-				-0.2
1,677,751	-				-0.6
1,677,751	-				+1.8
1,677,788	-		PP_5471	0.12	+1.1
1,677,788	-		PP_5471	0.12	+0.3
1,678,204	-				-0.1
1,678,208	+				-0.7
1,678,208	+				+0.1
1,678,208	+				+0.1
1,678,209	-				-1.2
1,678,209	-				-0.9
1,678,209	-				+0.7
1,678,315	-		PP_1473	0.28	+0.3
1,678,315	-		PP_1473	0.28	-1.0
1,678,351	-		PP_1473	0.40	+0.5
1,678,351	-		PP_1473	0.40	-0.7
1,678,351	-		PP_1473	0.40	+3.6
1,678,353	+		PP_1473	0.41	-0.2
1,678,443	-		PP_1473	0.73	-1.2
1,678,537	+				+0.3
1,678,537	+				+1.3
1,678,537	+				-0.9
1,678,538	-				-0.5
1,678,661	+				-3.0
1,678,661	+				-0.1
1,678,662	-				+0.7
1,678,662	-				+1.7
1,678,694	-				+1.3
1,678,706	+				+1.4
1,678,738	+				+0.1
1,678,738	+				-0.5
1,678,739	-				-1.3
1,678,739	-				-0.7
1,678,739	-				+3.1
1,678,742	+				-1.3
1,678,778	+				+1.0
1,678,778	+				-0.1
1,678,779	-				-2.0
1,678,779	-				-1.5
1,678,779	-				+0.9
1,678,810	-		PP_1474	0.12	+2.9
1,678,810	-		PP_1474	0.12	-1.1
1,678,908	+		PP_1474	0.23	+0.4
1,678,908	+		PP_1474	0.23	-0.5
1,678,919	+		PP_1474	0.24	+1.9
1,678,955	+		PP_1474	0.29	+0.0
1,678,956	-		PP_1474	0.29	+0.2
1,679,102	+		PP_1474	0.45	-0.2
1,679,103	-		PP_1474	0.45	+1.3
1,679,103	-		PP_1474	0.45	-0.7
1,679,103	-		PP_1474	0.45	+0.1