Strain Fitness in Pseudomonas putida KT2440 around PP_5321

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
6,064,952	+		PP_5319	0.86	+1.4
6,064,952	+		PP_5319	0.86	+0.1
6,064,952	+		PP_5319	0.86	-0.7
6,064,952	+		PP_5319	0.86	-1.8
6,064,953	-		PP_5319	0.86	+1.9
6,064,953	-		PP_5319	0.86	+0.3
6,064,953	-		PP_5319	0.86	-1.4
6,064,953	-		PP_5319	0.86	-0.1
6,064,953	-		PP_5319	0.86	+2.6
6,065,025	+				-2.2
6,065,026	-				+0.6
6,065,031	-				-1.3
6,065,031	-				-3.1
6,065,031	-				+1.3
6,065,031	-				-2.3
6,065,031	-				+0.2
6,065,086	-				-1.0
6,065,098	+				-1.0
6,065,098	+				-3.4
6,065,098	+				+2.7
6,065,098	+				+0.8
6,065,098	+				+2.6
6,065,098	+				-0.6
6,065,098	+				+0.1
6,065,098	+				+0.5
6,065,099	-				+0.9
6,065,099	-				+0.3
6,065,099	-				-1.2
6,065,144	-				-1.3
6,065,445	+		PP_5320	0.47	-1.3
6,065,445	+		PP_5320	0.47	-1.7
6,065,445	+		PP_5320	0.47	+0.4
6,065,446	-		PP_5320	0.47	-0.7
6,065,619	+		PP_5320	0.71	-1.7
6,065,661	+		PP_5320	0.77	+0.3
6,065,662	-		PP_5320	0.77	-0.7
6,065,706	+		PP_5320	0.83	-0.5
6,065,706	+		PP_5320	0.83	-0.6
6,065,706	+		PP_5320	0.83	-0.6
6,065,707	-		PP_5320	0.83	+0.0
6,065,707	-		PP_5320	0.83	-2.5
6,065,707	-		PP_5320	0.83	-1.2
6,065,707	-		PP_5320	0.83	-4.2
6,065,707	-		PP_5320	0.83	-1.9
6,065,720	+		PP_5320	0.85	+1.3
6,065,720	+		PP_5320	0.85	-2.0
6,065,782	+				-0.4
6,065,862	+				-0.4
6,065,863	-				+0.7
6,065,863	-				+3.3
6,065,928	-				+0.3
6,065,962	-				-1.0
6,065,964	+				-1.7
6,065,965	-				+1.1
6,065,965	-				-0.7
6,065,965	-				+0.3
6,065,997	+				-4.6
6,066,082	-		PP_5321	0.16	-0.6
6,066,101	-		PP_5321	0.17	-3.7
6,066,114	+		PP_5321	0.18	-2.0
6,066,114	+		PP_5321	0.18	-1.0
6,066,115	-		PP_5321	0.18	+2.8
6,066,115	-		PP_5321	0.18	-1.4
6,066,115	-		PP_5321	0.18	-1.3
6,066,115	-		PP_5321	0.18	-1.7
6,066,357	+		PP_5321	0.37	-4.9
6,066,357	+		PP_5321	0.37	-0.0
6,066,882	+		PP_5321	0.77	-0.7
6,066,882	+		PP_5321	0.77	-1.2
6,066,882	+		PP_5321	0.77	+1.3
6,066,882	+		PP_5321	0.77	+0.3
6,066,883	-		PP_5321	0.77	-0.1
6,066,883	-		PP_5321	0.77	-2.3
6,067,008	+		PP_5321	0.86	-0.4
6,067,009	-		PP_5321	0.87	-2.9
6,067,015	+		PP_5321	0.87	-4.6
6,067,016	-		PP_5321	0.87	-1.0
6,067,139	+				-1.0
6,067,139	+				-1.3
6,067,140	-				-1.4
6,067,140	-				-0.7
6,067,140	-				-1.6
6,067,140	-				-1.7
6,067,263	+				+0.3
6,067,263	+				+1.2
6,067,278	+				+0.3
6,067,375	+				+0.2
6,067,376	-				+1.8
6,067,378	+				-1.5
6,067,378	+				+0.3
6,067,379	-				-0.8
6,067,392	+				+2.3
6,067,393	-				-0.2
6,067,489	+				+1.9
6,067,569	-		PP_5322	0.16	+0.3
6,067,569	-		PP_5322	0.16	-2.0
6,067,736	+		PP_5322	0.28	-0.3
6,067,736	+		PP_5322	0.28	-1.1
6,067,737	-		PP_5322	0.28	+0.8
6,067,737	-		PP_5322	0.28	-1.7
6,067,737	-		PP_5322	0.28	-2.3
6,067,737	-		PP_5322	0.28	-1.4
6,067,826	+		PP_5322	0.35	-1.3
6,067,827	-		PP_5322	0.35	+0.3
6,067,836	-		PP_5322	0.36	-0.7
6,067,836	-		PP_5322	0.36	+1.0
6,067,859	+		PP_5322	0.37	-0.7
6,067,860	-		PP_5322	0.37	-0.0
6,067,860	-		PP_5322	0.37	-2.5
6,067,860	-		PP_5322	0.37	-1.0
6,068,156	+		PP_5322	0.60	+3.1
6,068,156	+		PP_5322	0.60	-2.5
6,068,156	+		PP_5322	0.60	-0.3