Strain Fitness in Pseudomonas putida KT2440 around PP_5225

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
5,959,318	+				+2.8
5,959,318	+				+0.7
5,959,318	+				-1.0
5,959,318	+				+0.6
5,959,318	+				-1.6
5,959,318	+				+1.3
5,959,318	+				-0.7
5,959,318	+				-1.6
5,959,319	-				+0.3
5,959,319	-				-1.3
5,959,319	-				+1.3
5,959,319	-				+0.1
5,959,319	-				+0.5
5,959,319	-				-1.3
5,959,319	-				+0.9
5,959,320	+				-1.1
5,959,321	-				-0.1
5,959,379	-				+0.5
5,959,379	-				+0.1
5,959,387	+				+0.3
5,959,387	+				-0.0
5,959,388	-				+0.8
5,959,388	-				-2.4
5,959,523	+				-1.3
5,959,523	+				+2.9
5,959,523	+				+2.7
5,959,524	-				-0.4
5,959,532	+				-0.0
5,959,533	-				+0.3
5,959,556	+				-1.2
5,959,556	+				-1.5
5,959,557	-				+2.6
5,959,557	-				-0.5
5,959,718	+		PP_5223	0.48	-1.7
5,959,718	+		PP_5223	0.48	+4.0
5,959,719	-		PP_5223	0.48	-2.9
5,959,851	+		PP_5223	0.80	+0.3
5,959,891	+		PP_5223	0.90	-1.1
5,959,891	+		PP_5223	0.90	-2.9
5,959,891	+		PP_5223	0.90	-0.5
5,959,891	+		PP_5223	0.90	+0.3
5,959,892	-				-0.2
5,959,892	-				-0.1
5,959,892	-				-0.9
5,960,045	+				+0.3
5,960,045	+				-0.4
5,960,046	-				-0.4
5,960,062	+				-0.1
5,960,223	+		PP_5224	0.64	-0.2
5,960,224	-		PP_5224	0.64	-0.3
5,960,224	-		PP_5224	0.64	+0.5
5,960,224	-		PP_5224	0.64	-0.0
5,960,266	+		PP_5224	0.83	+2.0
5,960,267	-		PP_5224	0.84	+1.3
5,960,298	-				-0.8
5,960,353	-		PP_5225	0.14	+1.5
5,960,665	-				+2.3
5,960,685	-				-2.3
5,960,758	-				-0.3
5,960,758	-				-0.1
5,960,758	-				-0.7
5,960,758	-				+2.3
5,960,778	+				+4.3
5,960,779	-				+2.3
5,960,784	+				+2.6
5,960,784	+				+1.4
5,960,835	+				+0.7
5,960,836	-				+0.3
5,960,837	+				+2.3
5,960,837	+				+0.6
5,960,837	+				+3.1
5,961,121	-				+0.3
5,961,121	-				+0.3
5,961,177	+				+1.3
5,961,178	-				+0.3
5,961,178	-				+0.3
5,961,192	+				+0.3
5,961,192	+				+0.3
5,961,192	+				-2.5
5,961,192	+				+0.3
5,961,193	-				+0.3
5,961,193	-				+0.3
5,961,193	-				+0.3
5,961,193	-				+0.3
5,961,193	-				+0.3
5,961,199	-				-1.7
5,961,199	-				+0.3
5,961,226	-				+0.3
5,961,230	+		PP_5227	0.10	+2.5
5,961,230	+		PP_5227	0.10	+0.3
5,961,230	+		PP_5227	0.10	+0.3
5,961,231	-		PP_5227	0.10	-2.3
5,961,231	-		PP_5227	0.10	+0.3
5,961,231	-		PP_5227	0.10	+0.3
5,961,234	+		PP_5227	0.10	+0.3
5,961,234	+		PP_5227	0.10	+0.3
5,961,234	+		PP_5227	0.10	-3.4
5,961,235	-		PP_5227	0.10	+0.3
5,961,508	+		PP_5227	0.32	-1.3
5,961,509	-		PP_5227	0.32	+0.3
5,961,509	-		PP_5227	0.32	+0.3
5,961,509	-		PP_5227	0.32	-1.7
5,961,585	+		PP_5227	0.38	+1.6
5,961,585	+		PP_5227	0.38	+0.3
5,961,585	+		PP_5227	0.38	+0.3
5,961,585	+		PP_5227	0.38	-0.7
5,961,585	+		PP_5227	0.38	-1.9
5,961,586	-		PP_5227	0.39	+0.3
5,961,586	-		PP_5227	0.39	-0.7
5,961,586	-		PP_5227	0.39	+0.3
5,961,586	-		PP_5227	0.39	+0.3
5,961,586	-		PP_5227	0.39	+0.3