Strain Fitness in Pseudomonas putida KT2440 around PP_5221

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
5,954,979	+				+1.4
5,954,980	-				-3.6
5,954,991	+				-0.8
5,954,991	+				+0.4
5,954,991	+				-1.7
5,954,992	-				+1.9
5,955,035	-				+2.3
5,955,035	-				+3.8
5,955,058	-				-0.4
5,955,077	+				+0.6
5,955,107	+				-0.5
5,955,107	+				+0.4
5,955,107	+				-0.7
5,955,108	-				-2.3
5,955,129	-				-0.4
5,955,260	+		PP_5220	0.23	+0.3
5,955,260	+		PP_5220	0.23	+3.1
5,955,260	+		PP_5220	0.23	-1.7
5,955,260	+		PP_5220	0.23	-0.6
5,955,260	+		PP_5220	0.23	-1.9
5,955,260	+		PP_5220	0.23	-0.3
5,955,260	+		PP_5220	0.23	-0.6
5,955,261	-		PP_5220	0.23	-0.5
5,955,261	-		PP_5220	0.23	+0.3
5,955,261	-		PP_5220	0.23	+2.6
5,955,261	-		PP_5220	0.23	+4.8
5,955,261	-		PP_5220	0.23	+1.7
5,955,261	-		PP_5220	0.23	-0.3
5,955,261	-		PP_5220	0.23	-2.4
5,955,261	-				+1.3
5,955,261	-		PP_5220	0.23	-0.2
5,955,305	+		PP_5220	0.29	+0.4
5,955,305	+		PP_5220	0.29	-1.7
5,955,306	-		PP_5220	0.30	-2.5
5,955,306	-		PP_5220	0.30	-0.1
5,955,306	-		PP_5220	0.30	+1.6
5,955,306	-		PP_5220	0.30	-2.4
5,955,306	-		PP_5220	0.30	+1.1
5,955,642	-		PP_5220	0.80	-0.6
5,955,642	-		PP_5220	0.80	-0.7
5,955,642	-		PP_5220	0.80	-0.5
5,955,691	+		PP_5220	0.87	+0.3
5,955,691	+		PP_5220	0.87	+0.9
5,955,692	-		PP_5220	0.88	+0.7
5,955,733	+				+0.8
5,955,733	+				-2.7
5,955,772	+				+0.3
5,955,772	+				+0.0
5,955,777	+				-0.9
5,955,778	-				+0.5
5,955,778	-				-0.1
5,955,778	-				+1.6
5,955,778	-				-0.8
5,955,898	-				+0.3
5,956,048	+		PP_5221	0.14	-0.5
5,956,252	+		PP_5221	0.56	+0.8
5,956,252	+		PP_5221	0.56	+1.4
5,956,253	-		PP_5221	0.56	+0.4
5,956,422	+				-0.3
5,956,422	+				-0.8
5,956,423	-				-0.5
5,956,423	-				+0.7
5,956,423	-				+1.2
5,956,442	+				+0.5
5,956,442	+				-2.3
5,956,442	+				+1.4
5,956,442	+				-0.4
5,956,443	-				-0.2
5,956,443	-				-0.3
5,956,443	-				+0.3
5,956,529	+				+2.6
5,956,529	+				-1.4
5,956,529	+				-2.1
5,956,742	+				-3.0
5,956,742	+				+0.1
5,956,742	+				+0.3
5,956,742	+				-1.9
5,956,742	+				+0.8
5,956,743	-				+1.9
5,956,795	+				-0.4
5,956,824	-				-0.8
5,956,832	-				-3.0
5,956,888	+		PP_5222	0.10	+0.7
5,956,888	+		PP_5222	0.10	+0.2
5,956,888	+		PP_5222	0.10	+0.4
5,956,889	-		PP_5222	0.10	-0.6
5,956,889	-		PP_5222	0.10	-1.7
5,956,889	-		PP_5222	0.10	+1.6
5,956,889	-		PP_5222	0.10	-3.7
5,956,889	-		PP_5222	0.10	+0.3
5,957,179	+		PP_5222	0.20	+0.3
5,957,250	-				+2.3
5,957,257	+		PP_5222	0.23	-1.0
5,957,258	-		PP_5222	0.23	+1.1
5,957,273	-		PP_5222	0.24	+0.2
5,957,273	-		PP_5222	0.24	+1.3
5,957,273	-		PP_5222	0.24	-1.3
5,957,275	+		PP_5222	0.24	-3.4
5,957,275	+		PP_5222	0.24	-2.7
5,957,275	+		PP_5222	0.24	+0.3
5,957,276	-		PP_5222	0.24	+0.5
5,957,276	-		PP_5222	0.24	+1.1
5,957,276	-		PP_5222	0.24	-0.8
5,957,281	+		PP_5222	0.24	+0.3
5,957,281	+		PP_5222	0.24	+1.2
5,957,281	+		PP_5222	0.24	+0.4
5,957,281	+		PP_5222	0.24	+0.3
5,957,281	+		PP_5222	0.24	+1.3
5,957,282	-		PP_5222	0.24	+2.3
5,957,282	-		PP_5222	0.24	-0.1
5,957,282	-		PP_5222	0.24	+0.3
5,957,452	+		PP_5222	0.30	+0.9
5,957,453	-		PP_5222	0.30	+3.5