Strain Fitness in Pseudomonas putida KT2440 around PP_5171

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
5,895,455	-		PP_5170	0.12	+0.9
5,895,455	-		PP_5170	0.12	-1.3
5,895,455	-		PP_5170	0.12	-0.9
5,895,460	+		PP_5170	0.13	-0.1
5,895,460	+		PP_5170	0.13	+1.3
5,895,461	-		PP_5170	0.13	-0.9
5,895,917	-		PP_5170	0.68	-2.4
5,895,917	-		PP_5170	0.68	+0.9
5,895,945	-		PP_5170	0.72	-0.7
5,896,111	+				+3.9
5,896,112	-				-2.4
5,896,112	-				-0.2
5,896,112	-				+1.5
5,896,112	-				-0.7
5,896,123	+				-3.5
5,896,124	-				+1.9
5,896,163	+				-0.9
5,896,163	+				+0.6
5,896,164	-				-1.4
5,896,164	-				-1.7
5,896,164	-				+2.6
5,896,175	+				-0.3
5,896,175	+				+1.3
5,896,175	+				-1.2
5,896,175	+				-2.5
5,896,175	+				-0.7
5,896,175	+				+2.6
5,896,176	-				-1.9
5,896,176	-				+0.3
5,896,176	-				+0.3
5,896,176	-				-1.5
5,896,179	+				+1.3
5,896,180	-				+0.1
5,896,198	+				-3.5
5,896,198	+				+1.4
5,896,199	-				+0.6
5,896,199	-				+0.7
5,896,361	+				-0.3
5,896,361	+				+0.3
5,896,361	+				-0.1
5,896,362	-				+1.4
5,896,362	-				+1.5
5,896,373	+				-1.4
5,896,373	+				-0.7
5,896,373	+				+1.1
5,896,374	-				+0.9
5,896,374	-				+0.9
5,896,518	-		PP_5171	0.15	+1.1
5,896,556	+		PP_5171	0.19	+1.1
5,896,557	-		PP_5171	0.19	+1.0
5,896,557	-		PP_5171	0.19	-0.5
5,896,571	+		PP_5171	0.21	-0.1
5,896,801	+		PP_5171	0.43	+1.6
5,896,801	+				+0.3
5,896,802	-		PP_5171	0.43	+1.1
5,896,802	-		PP_5171	0.43	+1.0
5,896,826	+		PP_5171	0.45	-0.7
5,896,826	+		PP_5171	0.45	-0.9
5,896,827	-		PP_5171	0.45	-2.1
5,896,827	-		PP_5171	0.45	+0.3
5,896,827	-		PP_5171	0.45	+1.9
5,897,018	+		PP_5171	0.64	+3.6
5,897,018	+		PP_5171	0.64	+1.0
5,897,018	+		PP_5171	0.64	+0.9
5,897,019	-		PP_5171	0.64	+0.6
5,897,019	-		PP_5171	0.64	+1.2
5,897,243	+		PP_5171	0.86	+0.1
5,897,243	+		PP_5171	0.86	+0.1
5,897,243	+		PP_5171	0.86	-0.4
5,897,243	+		PP_5171	0.86	-2.5
5,897,244	-		PP_5171	0.86	-1.4
5,897,244	-		PP_5171	0.86	-0.4
5,897,244	-		PP_5171	0.86	+0.4
5,897,244	-		PP_5171	0.86	+1.6
5,897,244	-		PP_5171	0.86	-0.3
5,897,252	+		PP_5171	0.87	+0.3
5,897,273	+		PP_5171	0.89	-0.6
5,897,274	-		PP_5171	0.89	+0.5
5,897,274	-		PP_5171	0.89	-1.3
5,897,274	-		PP_5171	0.89	+0.3
5,897,274	-		PP_5171	0.89	+0.2
5,897,274	-		PP_5171	0.89	-2.0
5,897,294	+				+1.5
5,897,294	+				+2.5
5,897,295	-				-0.1
5,897,582	+				-1.8
5,897,582	+				-0.4
5,897,582	+				+4.0
5,897,583	-				-2.3
5,897,583	-				-0.2
5,897,670	+				+0.9
5,897,670	+				-1.1
5,897,671	-				+1.0
5,897,671	-				+0.3
5,897,671	-				+2.6
5,897,671	-				+1.0
5,897,673	+				-0.7
5,897,673	+				+0.5
5,897,673	+				-2.2
5,897,673	+				+3.5
5,897,674	-				-1.6
5,897,674	-				+1.3
5,897,674	-				+1.5
5,897,747	+				+0.7
5,897,748	-				-3.5
5,897,748	-				+0.9
5,897,770	-				-0.8
5,897,865	+				-2.1
5,897,865	+				+2.2
5,897,877	+				-0.9
5,897,940	+				-0.4
5,898,089	+				+0.9
5,898,115	+				-0.9
5,898,307	+		PP_5173	0.15	+0.0