Experiment: pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5098 and PP_5099 are separated by 22 nucleotides PP_5099 and PP_5100 overlap by 4 nucleotides PP_5100 and PP_5101 overlap by 4 nucleotides
PP_5098: PP_5098 - methionine biosynthesis protein MetW, at 5,821,380 to 5,822,018
_5098
PP_5099: PP_5099 - conserved protein of unknown function, at 5,822,041 to 5,822,475
_5099
PP_5100: PP_5100 - dITP/XTP pyrophosphatase, at 5,822,472 to 5,823,068
_5100
PP_5101: PP_5101 - coproporphyrinogen/heterocyclic compound oxidase (aerobic), at 5,823,065 to 5,824,240
_5101
Position (kb) 5822
5823
5824 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 5821.545 kb on - strand, within PP_5098 at 5821.545 kb on - strand, within PP_5098 at 5821.669 kb on - strand, within PP_5098 at 5821.758 kb on + strand, within PP_5098 at 5821.803 kb on + strand, within PP_5098 at 5821.803 kb on + strand, within PP_5098 at 5821.803 kb on + strand, within PP_5098 at 5821.803 kb on + strand, within PP_5098 at 5821.803 kb on + strand, within PP_5098 at 5821.804 kb on - strand, within PP_5098 at 5821.804 kb on - strand, within PP_5098 at 5821.805 kb on + strand, within PP_5098 at 5821.805 kb on + strand, within PP_5098 at 5821.805 kb on + strand, within PP_5098 at 5821.806 kb on - strand, within PP_5098 at 5821.812 kb on + strand, within PP_5098 at 5821.813 kb on - strand, within PP_5098 at 5821.813 kb on - strand, within PP_5098 at 5821.813 kb on - strand, within PP_5098 at 5821.946 kb on + strand, within PP_5098 at 5821.947 kb on - strand, within PP_5098 at 5821.955 kb on - strand at 5821.955 kb on - strand at 5821.955 kb on - strand at 5821.971 kb on + strand at 5821.972 kb on - strand at 5822.130 kb on - strand, within PP_5099 at 5822.152 kb on + strand, within PP_5099 at 5822.356 kb on + strand, within PP_5099 at 5822.359 kb on + strand, within PP_5099 at 5822.359 kb on + strand, within PP_5099 at 5822.359 kb on + strand, within PP_5099 at 5822.360 kb on - strand, within PP_5099 at 5822.360 kb on - strand, within PP_5099 at 5822.360 kb on - strand, within PP_5099 at 5822.360 kb on - strand, within PP_5099 at 5822.360 kb on - strand, within PP_5099 at 5822.360 kb on - strand, within PP_5099 at 5822.494 kb on + strand at 5822.728 kb on - strand, within PP_5100 at 5822.728 kb on - strand, within PP_5100 at 5822.740 kb on - strand, within PP_5100 at 5822.989 kb on + strand, within PP_5100 at 5822.990 kb on - strand, within PP_5100 at 5823.128 kb on + strand at 5823.129 kb on - strand at 5823.129 kb on - strand at 5823.151 kb on - strand at 5823.215 kb on + strand, within PP_5101 at 5823.261 kb on + strand, within PP_5101 at 5823.261 kb on + strand, within PP_5101 at 5823.340 kb on - strand, within PP_5101 at 5823.351 kb on + strand, within PP_5101 at 5823.351 kb on + strand, within PP_5101 at 5823.351 kb on + strand, within PP_5101 at 5823.351 kb on + strand, within PP_5101 at 5823.352 kb on - strand, within PP_5101 at 5823.352 kb on - strand, within PP_5101 at 5823.361 kb on + strand, within PP_5101 at 5823.361 kb on + strand, within PP_5101 at 5823.362 kb on - strand, within PP_5101 at 5823.362 kb on - strand, within PP_5101 at 5823.680 kb on + strand, within PP_5101 at 5823.681 kb on - strand, within PP_5101 at 5823.813 kb on + strand, within PP_5101 at 5823.860 kb on + strand, within PP_5101 at 5823.860 kb on + strand, within PP_5101 at 5823.860 kb on + strand, within PP_5101 at 5823.968 kb on + strand, within PP_5101 at 5823.969 kb on - strand, within PP_5101
Per-strain Table
Position Strand Gene LocusTag Fraction pH 4 remove 5,821,545 - PP_5098 0.26 -3.6 5,821,545 - PP_5098 0.26 -2.7 5,821,669 - PP_5098 0.45 +0.3 5,821,758 + PP_5098 0.59 -0.7 5,821,803 + PP_5098 0.66 -3.0 5,821,803 + PP_5098 0.66 -2.5 5,821,803 + PP_5098 0.66 -3.5 5,821,803 + PP_5098 0.66 -0.7 5,821,803 + PP_5098 0.66 -4.1 5,821,804 - PP_5098 0.66 -3.8 5,821,804 - PP_5098 0.66 +0.3 5,821,805 + PP_5098 0.67 -3.7 5,821,805 + PP_5098 0.67 -5.4 5,821,805 + PP_5098 0.67 -4.6 5,821,806 - PP_5098 0.67 -4.5 5,821,812 + PP_5098 0.68 -4.4 5,821,813 - PP_5098 0.68 -2.9 5,821,813 - PP_5098 0.68 -3.8 5,821,813 - PP_5098 0.68 -3.7 5,821,946 + PP_5098 0.89 -4.7 5,821,947 - PP_5098 0.89 -2.7 5,821,955 - +0.3 5,821,955 - -3.0 5,821,955 - +0.3 5,821,971 + -2.0 5,821,972 - -2.0 5,822,130 - PP_5099 0.20 -2.1 5,822,152 + PP_5099 0.26 -1.1 5,822,356 + PP_5099 0.72 +0.8 5,822,359 + PP_5099 0.73 -0.6 5,822,359 + PP_5099 0.73 +1.7 5,822,359 + PP_5099 0.73 -0.9 5,822,360 - PP_5099 0.73 -1.0 5,822,360 - PP_5099 0.73 -0.1 5,822,360 - PP_5099 0.73 -0.5 5,822,360 - PP_5099 0.73 +1.2 5,822,360 - PP_5099 0.73 -3.0 5,822,360 - PP_5099 0.73 +1.9 5,822,494 + +0.3 5,822,728 - PP_5100 0.43 +2.9 5,822,728 - PP_5100 0.43 +2.9 5,822,740 - PP_5100 0.45 -0.7 5,822,989 + PP_5100 0.87 +0.5 5,822,990 - PP_5100 0.87 -3.5 5,823,128 + -0.9 5,823,129 - -0.4 5,823,129 - +0.3 5,823,151 - -1.3 5,823,215 + PP_5101 0.13 +0.3 5,823,261 + PP_5101 0.17 +2.3 5,823,261 + PP_5101 0.17 -1.3 5,823,340 - PP_5101 0.23 +1.1 5,823,351 + PP_5101 0.24 +3.3 5,823,351 + PP_5101 0.24 +0.3 5,823,351 + PP_5101 0.24 -0.2 5,823,351 + PP_5101 0.24 +1.6 5,823,352 - PP_5101 0.24 +0.6 5,823,352 - PP_5101 0.24 +2.5 5,823,361 + PP_5101 0.25 +1.9 5,823,361 + PP_5101 0.25 +0.0 5,823,362 - PP_5101 0.25 -0.1 5,823,362 - PP_5101 0.25 +1.5 5,823,680 + PP_5101 0.52 +3.1 5,823,681 - PP_5101 0.52 -2.8 5,823,813 + PP_5101 0.64 -0.7 5,823,860 + PP_5101 0.68 -0.7 5,823,860 + PP_5101 0.68 -1.1 5,823,860 + PP_5101 0.68 +1.3 5,823,968 + PP_5101 0.77 -0.0 5,823,969 - PP_5101 0.77 -0.7
Or see this region's nucleotide sequence