Strain Fitness in Pseudomonas putida KT2440 around PP_4952
Experiment: pH 4
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | pH 4 |
---|---|---|---|---|---|
remove | |||||
5,640,975 | + | PP_4951 | 0.45 | -1.7 | |
5,640,976 | - | PP_4951 | 0.45 | +0.1 | |
5,640,976 | - | PP_4951 | 0.45 | -0.2 | |
5,641,232 | + | PP_4951 | 0.63 | -0.7 | |
5,641,233 | - | PP_4951 | 0.63 | +0.8 | |
5,641,348 | + | PP_4951 | 0.71 | -0.7 | |
5,641,348 | + | PP_4951 | 0.71 | +0.6 | |
5,641,349 | - | PP_4951 | 0.71 | +0.3 | |
5,641,351 | + | PP_4951 | 0.71 | +0.3 | |
5,641,352 | - | PP_4951 | 0.71 | -1.1 | |
5,641,601 | - | PP_4951 | 0.88 | -1.2 | |
5,641,674 | + | +0.7 | |||
5,641,674 | + | +1.8 | |||
5,641,675 | - | -1.7 | |||
5,641,675 | - | -2.7 | |||
5,641,675 | - | +0.8 | |||
5,641,787 | + | +0.0 | |||
5,641,787 | + | +3.1 | |||
5,641,787 | + | -0.2 | |||
5,641,788 | - | -3.3 | |||
5,641,788 | - | -0.1 | |||
5,641,792 | + | +1.7 | |||
5,641,792 | + | +1.3 | |||
5,641,793 | - | +0.3 | |||
5,641,793 | - | +0.3 | |||
5,641,793 | - | -1.2 | |||
5,641,793 | - | -2.3 | |||
5,641,905 | + | -0.3 | |||
5,641,905 | + | +1.3 | |||
5,642,398 | - | PP_4952 | 0.41 | -1.0 | |
5,642,921 | + | PP_4952 | 0.79 | -1.6 | |
5,643,210 | - | -0.1 | |||
5,643,213 | + | +0.0 | |||
5,643,214 | - | +0.6 | |||
5,643,214 | - | -0.1 | |||
5,643,235 | + | +1.5 | |||
5,643,504 | - | PP_4953 | 0.14 | +1.0 | |
5,643,615 | - | PP_4953 | 0.23 | -1.3 |
Or see this region's nucleotide sequence