Experiment: pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4867 and PP_4868 are separated by 509 nucleotides PP_4868 and PP_4869 are separated by 3 nucleotides PP_4869 and PP_4870 are separated by 102 nucleotides
PP_4867: PP_4867 - branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like), at 5,533,338 to 5,534,474
_4867
PP_4868: PP_4868 - Nicotinate phosphoribosyltransferase, at 5,534,984 to 5,536,192
_4868
PP_4869: PP_4869 - NH(3)-dependent NAD(+) synthetase, at 5,536,196 to 5,537,023
_4869
PP_4870: PP_4870 - Azurin, at 5,537,126 to 5,537,575
_4870
Position (kb) 5534
5535
5536
5537 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5534.002 kb on + strand, within PP_4867 at 5534.003 kb on - strand, within PP_4867 at 5534.018 kb on + strand, within PP_4867 at 5534.128 kb on + strand, within PP_4867 at 5534.128 kb on + strand, within PP_4867 at 5534.128 kb on + strand, within PP_4867 at 5534.128 kb on + strand, within PP_4867 at 5534.129 kb on - strand, within PP_4867 at 5534.129 kb on - strand, within PP_4867 at 5534.129 kb on - strand, within PP_4867 at 5534.130 kb on + strand, within PP_4867 at 5534.130 kb on + strand, within PP_4867 at 5534.130 kb on + strand, within PP_4867 at 5534.131 kb on - strand, within PP_4867 at 5534.131 kb on - strand, within PP_4867 at 5534.332 kb on + strand, within PP_4867 at 5534.332 kb on + strand, within PP_4867 at 5534.332 kb on + strand, within PP_4867 at 5534.333 kb on - strand, within PP_4867 at 5534.404 kb on + strand at 5534.426 kb on + strand at 5534.427 kb on - strand at 5534.427 kb on - strand at 5534.427 kb on - strand at 5534.430 kb on + strand at 5534.510 kb on - strand at 5534.510 kb on - strand at 5534.510 kb on - strand at 5534.510 kb on - strand at 5534.616 kb on - strand at 5534.660 kb on + strand at 5534.660 kb on + strand at 5534.661 kb on - strand at 5534.661 kb on - strand at 5534.712 kb on + strand at 5534.713 kb on - strand at 5534.713 kb on - strand at 5534.774 kb on + strand at 5534.868 kb on + strand at 5534.869 kb on - strand at 5534.869 kb on - strand at 5535.044 kb on + strand at 5535.044 kb on + strand at 5535.140 kb on + strand, within PP_4868 at 5535.141 kb on - strand, within PP_4868 at 5535.282 kb on - strand, within PP_4868 at 5535.388 kb on - strand, within PP_4868 at 5535.388 kb on - strand, within PP_4868 at 5535.388 kb on - strand, within PP_4868 at 5535.388 kb on - strand, within PP_4868 at 5535.443 kb on + strand, within PP_4868 at 5535.444 kb on - strand, within PP_4868 at 5535.631 kb on + strand, within PP_4868 at 5535.812 kb on + strand, within PP_4868 at 5536.154 kb on + strand at 5536.167 kb on + strand at 5536.167 kb on + strand at 5537.024 kb on + strand at 5537.024 kb on + strand at 5537.025 kb on - strand at 5537.025 kb on - strand at 5537.025 kb on - strand at 5537.025 kb on - strand at 5537.025 kb on - strand at 5537.057 kb on + strand at 5537.127 kb on + strand at 5537.127 kb on + strand at 5537.191 kb on - strand, within PP_4870 at 5537.191 kb on - strand, within PP_4870
Per-strain Table
Position Strand Gene LocusTag Fraction pH 4 remove 5,534,002 + PP_4867 0.58 +0.4 5,534,003 - PP_4867 0.58 -2.2 5,534,018 + PP_4867 0.60 +1.6 5,534,128 + PP_4867 0.69 -1.3 5,534,128 + PP_4867 0.69 +1.3 5,534,128 + PP_4867 0.69 +3.6 5,534,128 + PP_4867 0.69 -0.1 5,534,129 - PP_4867 0.70 -1.7 5,534,129 - PP_4867 0.70 -1.0 5,534,129 - PP_4867 0.70 +1.2 5,534,130 + PP_4867 0.70 -2.2 5,534,130 + PP_4867 0.70 +0.2 5,534,130 + PP_4867 0.70 +2.8 5,534,131 - PP_4867 0.70 +1.3 5,534,131 - PP_4867 0.70 +1.8 5,534,332 + PP_4867 0.87 -2.6 5,534,332 + PP_4867 0.87 +0.3 5,534,332 + PP_4867 0.87 +1.0 5,534,333 - PP_4867 0.88 +0.5 5,534,404 + +1.8 5,534,426 + -1.1 5,534,427 - -0.7 5,534,427 - -0.1 5,534,427 - +1.0 5,534,430 + +0.8 5,534,510 - -0.6 5,534,510 - +0.2 5,534,510 - -0.5 5,534,510 - +2.2 5,534,616 - +0.2 5,534,660 + -0.5 5,534,660 + -0.8 5,534,661 - +2.2 5,534,661 - -0.3 5,534,712 + -0.8 5,534,713 - -2.6 5,534,713 - +4.2 5,534,774 + +0.2 5,534,868 + -1.3 5,534,869 - +0.2 5,534,869 - -1.1 5,535,044 + -1.6 5,535,044 + -4.5 5,535,140 + PP_4868 0.13 +1.2 5,535,141 - PP_4868 0.13 +0.7 5,535,282 - PP_4868 0.25 +0.5 5,535,388 - PP_4868 0.33 +2.2 5,535,388 - PP_4868 0.33 +1.2 5,535,388 - PP_4868 0.33 +0.5 5,535,388 - PP_4868 0.33 +0.8 5,535,443 + PP_4868 0.38 -0.3 5,535,444 - PP_4868 0.38 +1.7 5,535,631 + PP_4868 0.54 -2.2 5,535,812 + PP_4868 0.68 +2.3 5,536,154 + -2.3 5,536,167 + +1.2 5,536,167 + -3.0 5,537,024 + -2.3 5,537,024 + +2.0 5,537,025 - +3.6 5,537,025 - -0.9 5,537,025 - +0.6 5,537,025 - +1.3 5,537,025 - +1.8 5,537,057 + -1.2 5,537,127 + +0.6 5,537,127 + -1.7 5,537,191 - PP_4870 0.14 +0.2 5,537,191 - PP_4870 0.14 -1.2
Or see this region's nucleotide sequence