Experiment: pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4759 and PP_4760 are separated by 71 nucleotides PP_4760 and PP_4761 are separated by 164 nucleotides PP_4761 and PP_4762 overlap by 4 nucleotides
PP_4759: PP_4759 - transcriptional regulator, GntR family, at 5,419,315 to 5,420,016
_4759
PP_4760: PP_4760 - Alcohol dehydrogenase, zinc-containing, at 5,420,088 to 5,421,098
_4760
PP_4761: PP_4761 - Hydrolase, haloacid dehalogenase-like family, at 5,421,263 to 5,421,853
_4761
PP_4762: PP_4762 - Acyl-CoA thioesterase II, at 5,421,850 to 5,422,719
_4762
Position (kb) 5420
5421
5422 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5419.122 kb on + strand at 5419.175 kb on + strand at 5419.194 kb on - strand at 5419.227 kb on - strand at 5419.534 kb on - strand, within PP_4759 at 5419.534 kb on - strand, within PP_4759 at 5419.620 kb on + strand, within PP_4759 at 5419.621 kb on - strand, within PP_4759 at 5419.708 kb on + strand, within PP_4759 at 5419.708 kb on + strand, within PP_4759 at 5419.708 kb on + strand, within PP_4759 at 5419.709 kb on - strand, within PP_4759 at 5419.709 kb on - strand, within PP_4759 at 5419.709 kb on - strand, within PP_4759 at 5419.709 kb on - strand, within PP_4759 at 5419.709 kb on - strand, within PP_4759 at 5419.795 kb on + strand, within PP_4759 at 5419.796 kb on - strand, within PP_4759 at 5419.895 kb on - strand, within PP_4759 at 5419.895 kb on - strand, within PP_4759 at 5420.004 kb on - strand at 5420.030 kb on + strand at 5420.030 kb on + strand at 5420.030 kb on + strand at 5420.031 kb on - strand at 5420.031 kb on - strand at 5420.039 kb on + strand at 5420.039 kb on + strand at 5420.039 kb on + strand at 5420.040 kb on - strand at 5420.040 kb on - strand at 5420.040 kb on - strand at 5420.041 kb on + strand at 5420.041 kb on + strand at 5420.042 kb on - strand at 5420.042 kb on - strand at 5420.042 kb on - strand at 5420.042 kb on - strand at 5420.063 kb on + strand at 5420.063 kb on + strand at 5420.063 kb on + strand at 5420.064 kb on - strand at 5420.073 kb on + strand at 5420.074 kb on - strand at 5420.215 kb on - strand, within PP_4760 at 5420.215 kb on - strand, within PP_4760 at 5420.467 kb on + strand, within PP_4760 at 5420.467 kb on + strand, within PP_4760 at 5420.468 kb on - strand, within PP_4760 at 5420.971 kb on + strand, within PP_4760 at 5420.972 kb on - strand, within PP_4760 at 5421.075 kb on + strand at 5421.075 kb on + strand at 5421.076 kb on - strand at 5421.076 kb on - strand at 5421.079 kb on + strand at 5421.079 kb on + strand at 5421.079 kb on + strand at 5421.079 kb on + strand at 5421.080 kb on - strand at 5421.080 kb on - strand at 5421.140 kb on - strand at 5421.211 kb on - strand at 5421.584 kb on - strand, within PP_4761 at 5421.980 kb on + strand, within PP_4762 at 5421.981 kb on - strand, within PP_4762 at 5421.981 kb on - strand, within PP_4762
Per-strain Table
Position Strand Gene LocusTag Fraction pH 4 remove 5,419,122 + -1.3 5,419,175 + +1.2 5,419,194 - +0.2 5,419,227 - +0.8 5,419,534 - PP_4759 0.31 -0.2 5,419,534 - PP_4759 0.31 -2.0 5,419,620 + PP_4759 0.43 -0.6 5,419,621 - PP_4759 0.44 +0.1 5,419,708 + PP_4759 0.56 -0.7 5,419,708 + PP_4759 0.56 -1.8 5,419,708 + PP_4759 0.56 +0.2 5,419,709 - PP_4759 0.56 -1.4 5,419,709 - PP_4759 0.56 -0.8 5,419,709 - PP_4759 0.56 -1.1 5,419,709 - PP_4759 0.56 +0.8 5,419,709 - PP_4759 0.56 +2.7 5,419,795 + PP_4759 0.68 -3.1 5,419,796 - PP_4759 0.69 -0.8 5,419,895 - PP_4759 0.83 +0.9 5,419,895 - PP_4759 0.83 +1.8 5,420,004 - +1.7 5,420,030 + -0.1 5,420,030 + -0.4 5,420,030 + -0.2 5,420,031 - -1.6 5,420,031 - -0.8 5,420,039 + -1.0 5,420,039 + +0.2 5,420,039 + +0.1 5,420,040 - -1.3 5,420,040 - -1.8 5,420,040 - +2.2 5,420,041 + +0.5 5,420,041 + -0.8 5,420,042 - +1.8 5,420,042 - -1.3 5,420,042 - -0.5 5,420,042 - -1.5 5,420,063 + -1.1 5,420,063 + +0.2 5,420,063 + -0.3 5,420,064 - +1.8 5,420,073 + -3.1 5,420,074 - -1.1 5,420,215 - PP_4760 0.13 +2.0 5,420,215 - PP_4760 0.13 -2.6 5,420,467 + PP_4760 0.37 +0.4 5,420,467 + PP_4760 0.37 +0.2 5,420,468 - PP_4760 0.38 +0.5 5,420,971 + PP_4760 0.87 +0.7 5,420,972 - PP_4760 0.87 +0.7 5,421,075 + -0.9 5,421,075 + -2.5 5,421,076 - +1.1 5,421,076 - -0.4 5,421,079 + -0.8 5,421,079 + +0.5 5,421,079 + -0.0 5,421,079 + +0.3 5,421,080 - -3.0 5,421,080 - -1.3 5,421,140 - +3.1 5,421,211 - +3.6 5,421,584 - PP_4761 0.54 +0.3 5,421,980 + PP_4762 0.15 -1.9 5,421,981 - PP_4762 0.15 +2.3 5,421,981 - PP_4762 0.15 +3.5
Or see this region's nucleotide sequence