Experiment: pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4481 and PP_4482 are separated by 336 nucleotides PP_4482 and PP_4483 are separated by 98 nucleotides PP_4483 and PP_4484 are separated by 22 nucleotides
PP_4481: PP_4481 - Succinylornithine transaminase/acetylornithine aminotransferase, at 5,091,084 to 5,092,304
_4481
PP_4482: PP_4482 - Transcriptional regulator, AraC family, at 5,092,641 to 5,093,621
_4482
PP_4483: PP_4483 - histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit, at 5,093,720 to 5,094,484
_4483
PP_4484: PP_4484 - histidine / lysine / arginine / ornithine ABC transporter - permease subunit, at 5,094,507 to 5,095,205
_4484
Position (kb)
5092
5093
5094 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 5091.787 kb on + strand, within PP_4481 at 5091.787 kb on + strand, within PP_4481 at 5091.788 kb on - strand, within PP_4481 at 5091.788 kb on - strand, within PP_4481 at 5091.788 kb on - strand, within PP_4481 at 5091.836 kb on - strand, within PP_4481 at 5092.243 kb on + strand at 5092.243 kb on + strand at 5092.299 kb on + strand at 5092.360 kb on + strand at 5092.360 kb on + strand at 5092.360 kb on + strand at 5092.360 kb on + strand at 5092.360 kb on + strand at 5092.361 kb on - strand at 5092.361 kb on - strand at 5092.405 kb on + strand at 5092.405 kb on + strand at 5092.406 kb on - strand at 5092.473 kb on + strand at 5092.474 kb on - strand at 5092.533 kb on + strand at 5092.533 kb on + strand at 5092.533 kb on + strand at 5092.534 kb on - strand at 5092.534 kb on - strand at 5092.534 kb on - strand at 5092.534 kb on - strand at 5092.617 kb on + strand at 5092.617 kb on + strand at 5092.617 kb on + strand at 5092.618 kb on - strand at 5092.618 kb on - strand at 5092.733 kb on + strand at 5092.733 kb on + strand at 5092.733 kb on + strand at 5092.738 kb on + strand at 5092.852 kb on + strand, within PP_4482 at 5092.880 kb on - strand, within PP_4482 at 5092.892 kb on + strand, within PP_4482 at 5093.034 kb on - strand, within PP_4482 at 5093.034 kb on - strand, within PP_4482 at 5093.067 kb on + strand, within PP_4482 at 5093.302 kb on + strand, within PP_4482 at 5093.509 kb on + strand, within PP_4482 at 5093.509 kb on + strand, within PP_4482 at 5093.509 kb on + strand, within PP_4482 at 5093.621 kb on + strand at 5093.621 kb on + strand at 5093.621 kb on + strand at 5093.622 kb on - strand at 5093.622 kb on - strand at 5093.622 kb on - strand at 5093.622 kb on - strand at 5093.626 kb on + strand at 5093.696 kb on + strand at 5093.721 kb on + strand at 5093.722 kb on - strand at 5093.876 kb on + strand, within PP_4483 at 5093.877 kb on - strand, within PP_4483 at 5094.037 kb on + strand, within PP_4483 at 5094.037 kb on + strand, within PP_4483 at 5094.037 kb on + strand, within PP_4483 at 5094.037 kb on + strand, within PP_4483 at 5094.037 kb on + strand, within PP_4483 at 5094.037 kb on + strand, within PP_4483 at 5094.037 kb on + strand, within PP_4483 at 5094.037 kb on + strand, within PP_4483 at 5094.038 kb on - strand, within PP_4483 at 5094.038 kb on - strand, within PP_4483 at 5094.038 kb on - strand, within PP_4483 at 5094.087 kb on + strand, within PP_4483 at 5094.088 kb on - strand, within PP_4483 at 5094.088 kb on - strand, within PP_4483 at 5094.480 kb on + strand at 5094.481 kb on - strand at 5094.481 kb on - strand at 5094.592 kb on + strand, within PP_4484 at 5094.592 kb on + strand, within PP_4484 at 5094.593 kb on - strand, within PP_4484 at 5094.593 kb on - strand, within PP_4484 at 5094.593 kb on - strand, within PP_4484 at 5094.593 kb on - strand, within PP_4484 at 5094.611 kb on + strand, within PP_4484 at 5094.611 kb on + strand, within PP_4484 at 5094.611 kb on + strand, within PP_4484 at 5094.611 kb on + strand, within PP_4484 at 5094.611 kb on + strand, within PP_4484 at 5094.611 kb on + strand, within PP_4484 at 5094.612 kb on - strand, within PP_4484 at 5094.613 kb on + strand, within PP_4484 at 5094.613 kb on + strand, within PP_4484 at 5094.613 kb on + strand, within PP_4484 at 5094.614 kb on - strand, within PP_4484
Per-strain Table
Position Strand Gene LocusTag Fraction pH 4 remove 5,091,787 + PP_4481 0.58 -1.6 5,091,787 + PP_4481 0.58 -2.4 5,091,788 - PP_4481 0.58 -3.3 5,091,788 - PP_4481 0.58 -1.0 5,091,788 - PP_4481 0.58 -3.0 5,091,836 - PP_4481 0.62 +0.4 5,092,243 + -2.3 5,092,243 + +0.4 5,092,299 + +0.4 5,092,360 + -1.4 5,092,360 + +0.4 5,092,360 + -3.2 5,092,360 + +1.4 5,092,360 + +1.1 5,092,361 - +3.0 5,092,361 - -3.3 5,092,405 + -0.6 5,092,405 + +0.7 5,092,406 - -1.4 5,092,473 + +1.8 5,092,474 - +0.7 5,092,533 + +1.6 5,092,533 + -1.1 5,092,533 + -0.4 5,092,534 - +0.4 5,092,534 - +0.1 5,092,534 - +0.4 5,092,534 - -0.4 5,092,617 + -0.9 5,092,617 + +0.1 5,092,617 + -3.9 5,092,618 - +1.7 5,092,618 - +1.2 5,092,733 + -0.8 5,092,733 + -4.2 5,092,733 + -1.2 5,092,738 + -0.6 5,092,852 + PP_4482 0.22 +0.4 5,092,880 - PP_4482 0.24 -1.9 5,092,892 + PP_4482 0.26 -0.3 5,093,034 - PP_4482 0.40 +0.4 5,093,034 - PP_4482 0.40 -2.4 5,093,067 + PP_4482 0.43 +0.4 5,093,302 + PP_4482 0.67 -4.6 5,093,509 + PP_4482 0.88 -2.0 5,093,509 + PP_4482 0.88 -2.5 5,093,509 + PP_4482 0.88 -1.6 5,093,621 + -1.6 5,093,621 + -2.9 5,093,621 + +0.4 5,093,622 - -0.9 5,093,622 - +1.4 5,093,622 - -0.3 5,093,622 - +0.4 5,093,626 + -2.4 5,093,696 + +1.4 5,093,721 + +2.5 5,093,722 - +0.7 5,093,876 + PP_4483 0.20 +1.1 5,093,877 - PP_4483 0.21 +0.5 5,094,037 + PP_4483 0.41 +0.8 5,094,037 + PP_4483 0.41 -0.3 5,094,037 + PP_4483 0.41 -1.7 5,094,037 + PP_4483 0.41 +2.0 5,094,037 + PP_4483 0.41 -2.0 5,094,037 + PP_4483 0.41 -0.4 5,094,037 + PP_4483 0.41 -1.2 5,094,037 + PP_4483 0.41 -3.0 5,094,038 - PP_4483 0.42 +1.8 5,094,038 - PP_4483 0.42 -1.2 5,094,038 - PP_4483 0.42 -1.2 5,094,087 + PP_4483 0.48 +0.5 5,094,088 - PP_4483 0.48 +0.3 5,094,088 - PP_4483 0.48 +0.1 5,094,480 + +0.4 5,094,481 - +1.0 5,094,481 - -1.0 5,094,592 + PP_4484 0.12 +0.0 5,094,592 + PP_4484 0.12 -0.6 5,094,593 - PP_4484 0.12 -0.2 5,094,593 - PP_4484 0.12 +0.4 5,094,593 - PP_4484 0.12 +0.4 5,094,593 - PP_4484 0.12 -0.9 5,094,611 + PP_4484 0.15 -0.2 5,094,611 + PP_4484 0.15 -1.5 5,094,611 + PP_4484 0.15 -3.0 5,094,611 + PP_4484 0.15 +1.6 5,094,611 + PP_4484 0.15 +0.7 5,094,611 + PP_4484 0.15 +2.5 5,094,612 - PP_4484 0.15 +1.4 5,094,613 + PP_4484 0.15 -0.4 5,094,613 + PP_4484 0.15 -0.4 5,094,613 + PP_4484 0.15 +0.4 5,094,614 - PP_4484 0.15 -1.0
Or see this region's nucleotide sequence