Strain Fitness in Pseudomonas putida KT2440 around PP_4386

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
4,978,508	+		PP_4384	0.87	+0.4
4,978,508	+		PP_4384	0.87	+1.2
4,978,509	-		PP_4384	0.87	+1.4
4,978,512	-		PP_4384	0.87	+4.3
4,978,606	+				+0.5
4,978,606	+				+2.1
4,978,606	+				+0.6
4,978,607	-				+0.3
4,978,607	-				+0.9
4,978,607	-				+1.0
4,978,637	+				-2.4
4,978,637	+				+0.4
4,978,637	+				-0.4
4,978,637	+				+0.2
4,978,637	+				+0.6
4,978,637	+				+0.7
4,978,638	-				-1.3
4,978,651	-				+0.6
4,978,703	+				+1.6
4,978,993	-		PP_4385	0.45	+1.0
4,979,021	+		PP_4385	0.49	+1.2
4,979,080	-		PP_4385	0.56	+1.2
4,979,081	+		PP_4385	0.57	-0.0
4,979,082	-		PP_4385	0.57	+0.5
4,979,082	-		PP_4385	0.57	+1.4
4,979,286	-		PP_4385	0.83	-0.2
4,979,286	-		PP_4385	0.83	+0.8
4,979,448	-				+0.4
4,979,519	+				-2.2
4,979,914	+		PP_4386	0.60	-0.3
4,979,914	+		PP_4386	0.60	+0.4
4,979,914	+		PP_4386	0.60	+0.7
4,979,914	+		PP_4386	0.60	+4.6
4,979,914	+		PP_4386	0.60	+2.1
4,979,914	+		PP_4386	0.60	-0.0
4,979,915	-		PP_4386	0.60	+0.7
4,979,915	-		PP_4386	0.60	+2.0
4,979,915	-		PP_4386	0.60	+0.2
4,980,193	+				+0.8
4,980,193	+				+0.2
4,980,194	-				-0.5
4,980,227	+				+0.1
4,980,321	+				+0.5
4,980,398	+		PP_4387	0.15	-0.3
4,980,398	+		PP_4387	0.15	+0.1
4,980,482	+		PP_4387	0.58	-1.6
4,980,482	+		PP_4387	0.58	+0.2
4,980,544	+				-1.7
4,980,603	+				-0.9
4,980,603	+				-0.1
4,980,621	+				-1.1
4,980,622	-				+2.4
4,980,622	-				+2.0
4,980,696	+				-0.3
4,980,697	-				-1.3
4,980,697	-				+1.9
4,980,723	-				+1.3
4,980,723	-				+0.6
4,980,723	-				+0.3
4,980,828	+		PP_4388	0.15	+0.0
4,980,828	+		PP_4388	0.15	+2.5
4,980,828	+		PP_4388	0.15	-1.2
4,980,828	+		PP_4388	0.15	-0.1
4,980,829	-		PP_4388	0.15	-1.1
4,980,829	-		PP_4388	0.15	+0.5
4,980,945	+		PP_4388	0.24	+3.1
4,981,032	+		PP_4388	0.30	-0.8
4,981,032	+		PP_4388	0.30	+0.5
4,981,032	+		PP_4388	0.30	+2.5
4,981,032	+		PP_4388	0.30	+0.3
4,981,032	+		PP_4388	0.30	-0.2
4,981,032	+		PP_4388	0.30	+0.1
4,981,033	-		PP_4388	0.31	+0.9
4,981,033	-		PP_4388	0.31	+0.5
4,981,033	-		PP_4388	0.31	+1.7