Strain Fitness in Pseudomonas putida KT2440 around PP_4231

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
4,801,351	+		PP_4229	0.34	-2.8
4,801,352	-		PP_4229	0.34	-2.6
4,801,376	+		PP_4229	0.38	-1.9
4,801,376	+		PP_4229	0.38	-0.8
4,801,376	+		PP_4229	0.38	-0.7
4,801,376	+		PP_4229	0.38	+0.2
4,801,377	-		PP_4229	0.38	-2.3
4,801,377	-		PP_4229	0.38	+0.4
4,801,412	+				-2.1
4,801,412	+		PP_4229	0.44	-0.7
4,801,412	+		PP_4229	0.44	-1.8
4,801,412	+		PP_4229	0.44	-0.8
4,801,413	-		PP_4229	0.44	+0.0
4,801,413	-		PP_4229	0.44	+0.0
4,801,416	+		PP_4229	0.45	-0.9
4,801,416	+		PP_4229	0.45	-1.3
4,801,417	-		PP_4229	0.45	+0.1
4,801,619	+		PP_4229	0.77	-1.0
4,801,733	+				+0.2
4,801,733	+				+2.0
4,801,734	-				+0.4
4,801,734	-				-2.1
4,801,734	-				+0.4
4,801,760	+				-0.8
4,801,761	-				+0.5
4,801,977	+		PP_4230	0.35	-1.4
4,801,977	+		PP_4230	0.35	-2.4
4,801,977	+		PP_4230	0.35	-1.2
4,801,977	+		PP_4230	0.35	-0.8
4,801,978	-		PP_4230	0.35	+0.2
4,802,039	+		PP_4230	0.46	+0.2
4,802,039	+		PP_4230	0.46	+0.7
4,802,040	-		PP_4230	0.46	-1.9
4,802,108	+		PP_4230	0.58	+0.8
4,802,238	+		PP_4230	0.81	+0.2
4,802,239	-		PP_4230	0.81	-1.1
4,802,239	-		PP_4230	0.81	+0.2
4,802,247	+		PP_4230	0.83	+1.4
4,802,248	-		PP_4230	0.83	+0.7
4,802,547	+		PP_4231	0.21	+1.8
4,802,548	-		PP_4231	0.21	+3.4
4,802,548	-		PP_4231	0.21	+0.2
4,802,548	-		PP_4231	0.21	+1.0
4,802,684	+		PP_4231	0.35	+0.5
4,802,685	-		PP_4231	0.35	+0.2
4,802,685	-		PP_4231	0.35	+0.5
4,802,711	+		PP_4231	0.38	+0.8
4,802,712	-		PP_4231	0.38	+2.4
4,802,875	+		PP_4231	0.55	+0.1
4,802,876	-		PP_4231	0.55	+0.4
4,802,876	-		PP_4231	0.55	+1.2
4,802,876	-		PP_4231	0.55	-2.2
4,802,876	-		PP_4231	0.55	+3.4
4,803,222	+				-1.0
4,803,223	-				-0.3
4,803,223	-				+1.9
4,803,223	-				-1.6
4,803,296	+				+2.0
4,803,296	+				+0.8
4,803,297	-				-1.1
4,803,297	-				-1.7
4,803,319	-				-0.2
4,803,348	-				-1.6
4,803,390	+				-1.0
4,803,400	+				+1.9
4,803,400	+				+1.2
4,803,400	+				-1.9
4,803,400	+				-0.5
4,803,401	-				-0.6
4,803,401	-				-1.5
4,803,401	-				-0.6
4,803,401	-				+0.2
4,803,401	-				+0.1
4,803,401	-				+0.2
4,803,401	-				-1.4
4,803,404	+				-1.3
4,803,404	+				+0.1
4,803,405	-				-1.1
4,803,405	-				+1.0
4,803,614	+		PP_4232	0.25	-0.2
4,803,615	-		PP_4232	0.25	-1.7
4,803,615	-		PP_4232	0.25	-0.9
4,803,615	-		PP_4232	0.25	+0.2
4,803,618	+		PP_4232	0.25	-0.1
4,803,618	+		PP_4232	0.25	-3.3
4,803,619	-		PP_4232	0.25	+0.2
4,803,711	+		PP_4232	0.33	+1.0
4,803,711	+		PP_4232	0.33	-0.1
4,803,712	-		PP_4232	0.33	-0.2
4,803,891	+		PP_4232	0.47	+0.7
4,803,891	+		PP_4232	0.47	+2.2
4,803,891	+		PP_4232	0.47	-0.8
4,803,996	+		PP_4232	0.56	-0.8
4,803,996	+		PP_4232	0.56	+1.2
4,804,059	+		PP_4232	0.61	+0.4
4,804,060	-		PP_4232	0.61	+1.3
4,804,060	-		PP_4232	0.61	-0.1
4,804,061	+		PP_4232	0.61	+0.2
4,804,061	+		PP_4232	0.61	-0.9
4,804,061	+		PP_4232	0.61	-1.8
4,804,061	+		PP_4232	0.61	-1.2
4,804,061	+		PP_4232	0.61	-0.2
4,804,061	+		PP_4232	0.61	-2.1
4,804,061	+		PP_4232	0.61	+0.8
4,804,061	+		PP_4232	0.61	+2.2
4,804,061	+		PP_4232	0.61	+0.1
4,804,061	+		PP_4232	0.61	-2.7
4,804,061	+		PP_4232	0.61	+0.2
4,804,061	+		PP_4232	0.61	-1.0
4,804,061	+		PP_4232	0.61	+3.0
4,804,061	+		PP_4232	0.61	-2.1
4,804,061	+		PP_4232	0.61	-0.5
4,804,062	-				-1.0
4,804,062	-		PP_4232	0.61	+1.4
4,804,062	-		PP_4232	0.61	-0.5
4,804,062	-		PP_4232	0.61	+1.7
4,804,062	-		PP_4232	0.61	-2.4
4,804,062	-		PP_4232	0.61	-0.8
4,804,146	-		PP_4232	0.68	+0.3
4,804,200	+		PP_4232	0.73	-0.1
4,804,200	+		PP_4232	0.73	+1.0
4,804,200	+		PP_4232	0.73	-0.4
4,804,201	-		PP_4232	0.73	-1.3
4,804,210	-				+1.2
4,804,287	+		PP_4232	0.80	+3.0
4,804,287	+		PP_4232	0.80	+1.5
4,804,288	-		PP_4232	0.80	+0.5