Strain Fitness in Pseudomonas putida KT2440 around PP_3926

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
4,430,379	-		PP_3925	0.14	+3.4
4,430,379	-		PP_3925	0.14	-0.2
4,430,391	-		PP_3925	0.15	-0.5
4,430,561	+		PP_3925	0.31	+0.7
4,430,561	+		PP_3925	0.31	+0.6
4,430,561	+		PP_3925	0.31	+0.5
4,430,561	+		PP_3925	0.31	+2.1
4,430,562	-		PP_3925	0.31	-0.6
4,430,693	+		PP_3925	0.43	+0.4
4,430,693	+		PP_3925	0.43	+1.2
4,430,694	-		PP_3925	0.43	-0.3
4,430,735	+		PP_3925	0.47	+1.1
4,430,735	+		PP_3925	0.47	-1.2
4,430,735	+		PP_3925	0.47	+0.0
4,430,736	-		PP_3925	0.47	-0.0
4,430,736	-		PP_3925	0.47	-0.7
4,430,996	+		PP_3925	0.72	-1.4
4,430,996	+		PP_3925	0.72	-0.9
4,430,997	-		PP_3925	0.72	-0.4
4,431,092	+		PP_3925	0.81	-0.4
4,431,092	+		PP_3925	0.81	-0.5
4,431,093	-		PP_3925	0.81	-0.0
4,431,134	+		PP_3925	0.85	+1.2
4,431,134	+		PP_3925	0.85	-2.5
4,431,137	+		PP_3925	0.85	+0.8
4,431,137	+		PP_3925	0.85	+1.8
4,431,137	+		PP_3925	0.85	-1.1
4,431,137	+		PP_3925	0.85	-2.4
4,431,137	+		PP_3925	0.85	-0.0
4,431,137	+				+1.2
4,431,137	+		PP_3925	0.85	+3.7
4,431,138	-		PP_3925	0.85	+3.1
4,431,138	-		PP_3925	0.85	+2.5
4,431,140	+		PP_3925	0.85	-0.3
4,431,140	+		PP_3925	0.85	-0.2
4,431,140	+		PP_3925	0.85	+0.2
4,431,140	+		PP_3925	0.85	+2.6
4,431,140	+		PP_3925	0.85	+0.9
4,431,140	+		PP_3925	0.85	+3.2
4,431,141	-		PP_3925	0.85	+1.7
4,431,141	-		PP_3925	0.85	-2.4
4,431,141	-		PP_3925	0.85	-0.8
4,431,141	-		PP_3925	0.85	-0.9
4,431,141	-		PP_3925	0.85	-0.1
4,431,141	-		PP_3925	0.85	-1.0
4,431,146	+		PP_3925	0.86	-0.7
4,431,147	-		PP_3925	0.86	+2.8
4,431,147	-		PP_3925	0.86	+0.0
4,431,185	+		PP_3925	0.89	+1.6
4,431,186	-		PP_3925	0.89	-0.1
4,431,186	-		PP_3925	0.89	-2.1
4,431,186	-		PP_3925	0.89	-1.3
4,431,194	+				+2.5
4,431,194	+				-3.1
4,431,194	+				-0.9
4,431,197	+				+0.9
4,431,197	+				+0.9
4,431,197	+				+0.3
4,431,198	-				-0.1
4,431,198	-				-0.7
4,431,704	+		PP_3926	0.48	+1.4
4,431,816	-		PP_3926	0.63	+1.8
4,431,920	-				+1.2
4,432,031	+				-0.8
4,432,055	+				+3.2
4,432,055	+				-1.2
4,432,055	+				+3.3
4,432,056	-				+1.3
4,432,128	+				-0.1
4,432,128	+				-1.0
4,432,128	+				-2.4
4,432,129	-				-1.6
4,432,167	+				-1.4
4,432,344	+		PP_3927	0.29	+2.4
4,432,344	+		PP_3927	0.29	+0.2
4,432,344	+		PP_3927	0.29	-2.3
4,432,345	-		PP_3927	0.29	+1.5
4,432,345	-		PP_3927	0.29	+1.6
4,432,345	-		PP_3927	0.29	-1.2
4,432,389	+		PP_3927	0.35	-0.4
4,432,395	+		PP_3927	0.36	+3.3
4,432,555	-		PP_3927	0.55	+0.2
4,432,571	-		PP_3927	0.57	-0.7
4,432,583	+		PP_3927	0.58	+0.2
4,432,584	-		PP_3927	0.59	+2.0
4,432,584	-		PP_3927	0.59	+0.4
4,432,584	-		PP_3927	0.59	-0.7
4,432,584	-		PP_3927	0.59	+1.0
4,432,617	+		PP_3927	0.63	-1.0
4,432,618	-		PP_3927	0.63	-1.2
4,432,851	+				+0.4
4,432,851	+				+0.2
4,432,852	-				-1.8
4,432,852	-				-0.3
4,432,852	-				-1.4
4,432,852	-				-1.0
4,432,895	+				+0.1
4,432,895	+				-1.0
4,432,895	+				-0.5
4,432,896	-				+2.3
4,432,896	-				+0.6
4,432,897	+				-0.4
4,432,897	+				+0.1
4,432,898	-				-0.2
4,432,898	-				+1.8
4,432,898	-				-1.6
4,432,898	-				-1.8
4,432,951	+				-0.1
4,432,951	+				+1.0
4,432,951	+				-0.5
4,432,951	+				+0.3
4,432,951	+				+0.2
4,432,951	+				+0.3
4,432,951	+				+0.1
4,432,951	+				+1.0
4,432,952	-				-0.4
4,432,952	-				-2.8
4,432,952	-				+0.6
4,432,952	-				-3.7
4,432,952	-				+0.5
4,432,952	-				-0.8
4,433,048	-				+1.9