Strain Fitness in Pseudomonas putida KT2440 around PP_3837

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
4,360,965	+		PP_3835	0.86	+0.6
4,360,965	+		PP_3835	0.86	-2.6
4,361,033	+				+1.2
4,361,034	-				+3.1
4,361,034	-				+0.9
4,361,034	-				+0.0
4,361,034	-				-0.0
4,361,034	-				-1.2
4,361,042	+				+0.0
4,361,043	-				+1.5
4,361,161	+				+0.1
4,361,289	+		PP_3836	0.30	-1.4
4,361,289	+		PP_3836	0.30	-1.5
4,361,290	-		PP_3836	0.30	+0.1
4,361,290	-		PP_3836	0.30	-2.4
4,361,313	+		PP_3836	0.39	+0.8
4,361,314	-		PP_3836	0.39	-0.3
4,361,314	-		PP_3836	0.39	-0.4
4,361,314	-		PP_3836	0.39	-0.8
4,361,314	-		PP_3836	0.39	+0.7
4,361,314	-		PP_3836	0.39	-1.2
4,361,360	+		PP_3836	0.56	+1.7
4,361,361	-		PP_3836	0.56	-3.3
4,361,387	+		PP_3836	0.66	+4.9
4,361,388	-		PP_3836	0.66	-1.3
4,361,388	-		PP_3836	0.66	+1.4
4,361,437	+		PP_3836	0.84	-0.8
4,361,483	-				-1.6
4,361,488	-				+2.2
4,361,564	-				+3.7
4,361,576	+				-3.4
4,361,576	+				-0.3
4,361,577	-				+3.2
4,361,834	-				+0.0
4,361,876	+				-3.0
4,361,876	+				+0.9
4,361,876	+				-2.5
4,361,908	+				-1.3
4,361,908	+				+1.0
4,361,909	-				+3.8
4,361,993	+		PP_3837	0.30	+1.3
4,361,994	-		PP_3837	0.30	-0.8
4,361,994	-		PP_3837	0.30	+1.4
4,361,994	-		PP_3837	0.30	-3.7
4,361,994	-		PP_3837	0.30	-1.4
4,361,994	-				-1.4
4,362,089	+		PP_3837	0.53	+2.2
4,362,089	+		PP_3837	0.53	+1.7
4,362,089	+		PP_3837	0.53	+0.2
4,362,508	+				+0.2
4,362,508	+				+0.2
4,362,508	+				+0.1
4,362,509	-				+0.2
4,362,510	+				-0.6
4,362,510	+				+0.5
4,362,510	+				+0.2
4,362,510	+				+0.9
4,362,511	-				+0.2
4,362,511	-				-0.8
4,362,511	-				+0.8
4,362,548	-				-0.5
4,362,548	-				-0.5
4,362,629	+				-2.7
4,362,724	+				+1.2
4,362,724	+				+0.4
4,362,724	+				-1.7
4,362,725	-				-0.5
4,362,725	-				+0.9
4,362,725	-				-0.7
4,362,725	-				+1.8
4,362,791	+				-0.2
4,362,791	+				-0.1
4,362,791	+				-0.1
4,362,792	-				+1.4
4,362,792	-				-1.5
4,362,862	+				-1.5
4,362,862	+				-0.6
4,362,863	-				-0.1
4,362,863	-				-2.1
4,362,863	-				-1.4
4,362,863	-				-2.3
4,362,863	-				+0.6
4,362,899	-				-0.6
4,362,899	-				-1.0
4,362,958	+				-0.2
4,362,959	-				-0.8
4,363,078	+		PP_3839	0.16	-1.0
4,363,078	+		PP_3839	0.16	-0.3
4,363,078	+		PP_3839	0.16	+3.2
4,363,078	+		PP_3839	0.16	-1.1
4,363,079	-		PP_3839	0.16	-0.7
4,363,079	-		PP_3839	0.16	-0.6
4,363,094	+		PP_3839	0.18	+2.3
4,363,095	-		PP_3839	0.18	-0.4
4,363,170	+		PP_3839	0.25	+0.9
4,363,170	+		PP_3839	0.25	-0.9
4,363,171	-		PP_3839	0.25	+1.3
4,363,194	+		PP_3839	0.28	+0.1