Strain Fitness in Pseudomonas putida KT2440 around PP_3693

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
4,210,149	+		PP_3692	0.79	+4.0
4,210,280	-		PP_3692	0.83	-0.1
4,210,291	+				+0.7
4,210,352	+		PP_3692	0.86	-0.9
4,210,353	-		PP_3692	0.86	+0.5
4,210,415	+		PP_3692	0.88	-0.3
4,210,415	+		PP_3692	0.88	-2.7
4,210,415	+		PP_3692	0.88	-1.9
4,210,415	+		PP_3692	0.88	+0.4
4,210,415	+		PP_3692	0.88	-0.8
4,210,416	-		PP_3692	0.88	+0.1
4,210,500	+				-1.0
4,210,501	-				+1.7
4,210,525	+				-0.2
4,210,543	+				-0.8
4,210,543	+				-0.3
4,210,543	+				-0.9
4,210,544	-				+1.4
4,210,544	-				+0.2
4,210,544	-				+0.1
4,210,544	-				-0.6
4,210,602	-				+1.5
4,210,656	+				+0.1
4,210,656	+				-0.4
4,210,690	+				-1.6
4,210,690	+				+0.5
4,210,691	-				-0.9
4,210,721	+				-0.5
4,210,721	+				+0.7
4,210,721	+				-1.0
4,210,722	-				-0.0
4,210,722	-				-0.4
4,210,729	+				-0.3
4,210,730	-				-0.3
4,210,773	-				+0.0
4,210,789	+				-1.9
4,210,789	+				+1.9
4,210,789	+				-1.3
4,210,790	-				-0.5
4,210,790	-				-1.4
4,210,790	-				-0.2
4,210,790	-				+2.9
4,210,790	-				+0.1
4,210,819	+				+1.0
4,210,820	-				+0.1
4,210,820	-				+0.1
4,210,843	-		PP_5621	0.18	+1.6
4,211,029	-		PP_5621	0.83	-0.9
4,211,029	-		PP_5621	0.83	+0.5
4,211,066	+				-0.3
4,211,066	+				-1.4
4,211,066	+				+0.1
4,211,093	-				-0.6
4,211,103	+				-0.9
4,211,116	+				+0.0
4,211,131	+				-3.3
4,211,164	-		PP_3693	0.10	-2.0
4,211,241	+		PP_3693	0.31	+0.8
4,211,250	-		PP_3693	0.34	-0.1
4,211,330	+		PP_3693	0.56	+1.1
4,211,331	-		PP_3693	0.56	+2.0
4,211,352	+		PP_3693	0.62	+3.5
4,211,352	+		PP_3693	0.62	+0.1
4,211,353	-		PP_3693	0.62	+0.1
4,211,492	+				+0.4
4,211,492	+				+1.7
4,211,493	-				+0.3
4,211,510	+				+0.3
4,211,511	-				+2.7
4,211,522	+				-2.1
4,211,620	+				-0.6
4,211,620	+				-0.5
4,211,621	-				+1.8
4,211,629	-				-0.1
4,211,629	-				-0.2
4,211,637	+				+2.9
4,211,637	+				+0.1
4,211,645	+				-1.0
4,211,678	-				+3.9
4,211,678	-				+2.3
4,211,678	-				+0.1
4,211,683	+				-0.1
4,211,683	+				+1.9
4,211,683	+				-0.2
4,211,688	-				-0.8
4,211,688	-				+1.1
4,211,748	+				+0.1
4,211,773	-		PP_3694	0.12	-2.2
4,211,788	-		PP_3694	0.14	+1.8
4,211,788	-		PP_3694	0.14	-0.1
4,211,788	-		PP_3694	0.14	-3.0
4,211,799	+		PP_3694	0.15	-3.6
4,211,800	-		PP_3694	0.15	+0.1
4,211,800	-		PP_3694	0.15	-0.2
4,211,835	+		PP_3694	0.19	+0.7
4,211,836	-		PP_3694	0.19	+0.1
4,211,836	-		PP_3694	0.19	+0.4
4,211,847	-		PP_3694	0.20	+2.1
4,211,857	+		PP_3694	0.21	-2.4
4,211,858	-		PP_3694	0.21	-0.4
4,211,858	-		PP_3694	0.21	+1.1
4,211,908	+		PP_3694	0.26	-0.1
4,211,932	+		PP_3694	0.29	-1.0
4,211,933	-		PP_3694	0.29	+0.1
4,211,933	-		PP_3694	0.29	-0.6
4,211,933	-		PP_3694	0.29	+1.1
4,211,933	-		PP_3694	0.29	+0.2
4,211,933	-		PP_3694	0.29	+0.4
4,211,943	+		PP_3694	0.30	-0.8
4,211,944	-		PP_3694	0.30	+0.4
4,211,958	-		PP_3694	0.31	-0.9
4,212,006	+		PP_3694	0.36	+1.1
4,212,007	-		PP_3694	0.37	-0.9
4,212,110	+		PP_3694	0.47	+0.5
4,212,134	+		PP_3694	0.50	-0.6
4,212,134	+		PP_3694	0.50	-0.2
4,212,144	+		PP_3694	0.51	-0.4
4,212,144	+		PP_3694	0.51	-5.0
4,212,144	+		PP_3694	0.51	+0.9
4,212,158	-		PP_3694	0.52	+0.9
4,212,158	-		PP_3694	0.52	+0.4
4,212,174	+		PP_3694	0.54	-0.3
4,212,175	-		PP_3694	0.54	+1.1
4,212,183	+		PP_3694	0.55	+4.1
4,212,184	-		PP_3694	0.55	-3.7
4,212,187	+		PP_3694	0.55	-1.2
4,212,228	+		PP_3694	0.60	-0.5
4,212,267	+		PP_3694	0.64	-0.3
4,212,267	+		PP_3694	0.64	-0.3
4,212,267	+		PP_3694	0.64	+0.1
4,212,267	+		PP_3694	0.64	-0.3
4,212,268	-		PP_3694	0.64	-0.5
4,212,268	-		PP_3694	0.64	-1.2
4,212,268	-		PP_3694	0.64	+0.1
4,212,268	-		PP_3694	0.64	-0.1
4,212,294	-		PP_3694	0.66	-1.2
4,212,301	+		PP_3694	0.67	-0.9
4,212,302	-		PP_3694	0.67	+0.3
4,212,340	+		PP_3694	0.71	+4.1
4,212,340	+		PP_3694	0.71	-2.4
4,212,341	-		PP_3694	0.71	+1.3
4,212,341	-		PP_3694	0.71	+0.1
4,212,393	-		PP_3694	0.77	-2.2
4,212,393	-		PP_3694	0.77	+5.1
4,212,404	+		PP_3694	0.78	+1.4
4,212,404	+		PP_3694	0.78	-1.4
4,212,404	+		PP_3694	0.78	+1.0
4,212,405	-		PP_3694	0.78	-1.0
4,212,405	-		PP_3694	0.78	+0.4
4,212,405	-		PP_3694	0.78	+1.5
4,212,466	+		PP_3694	0.84	+0.9
4,212,466	+		PP_3694	0.84	+1.5
4,212,466	+		PP_3694	0.84	+0.1
4,212,466	+		PP_3694	0.84	+1.1
4,212,466	+		PP_3694	0.84	+0.1
4,212,466	+		PP_3694	0.84	-1.8
4,212,467	-		PP_3694	0.84	-0.8
4,212,467	-		PP_3694	0.84	-1.7
4,212,471	-		PP_3694	0.85	-1.2