Strain Fitness in Pseudomonas putida KT2440 around PP_3667

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
4,165,264	-		PP_3666	0.37	-0.5
4,165,264	-		PP_3666	0.37	+0.3
4,165,275	+		PP_3666	0.38	-1.2
4,165,275	+		PP_3666	0.38	+1.8
4,165,276	-		PP_3666	0.38	-2.1
4,165,276	-		PP_3666	0.38	-0.4
4,165,290	+		PP_3666	0.39	-0.5
4,165,291	-		PP_3666	0.39	+1.0
4,165,291	-		PP_3666	0.39	-0.3
4,165,454	-		PP_3666	0.51	+1.4
4,165,455	+		PP_3666	0.52	+0.4
4,165,455	+		PP_3666	0.52	-1.0
4,165,455	+		PP_3666	0.52	+1.2
4,165,455	+		PP_3666	0.52	+1.1
4,165,455	+		PP_3666	0.52	-0.1
4,165,455	+		PP_3666	0.52	-1.2
4,165,456	-		PP_3666	0.52	-0.5
4,165,611	+		PP_3666	0.63	-0.6
4,165,611	+		PP_3666	0.63	-0.5
4,165,611	+		PP_3666	0.63	-2.0
4,165,612	-		PP_3666	0.63	-1.0
4,165,612	-		PP_3666	0.63	-0.8
4,165,695	-		PP_3666	0.70	-0.2
4,165,746	+		PP_3666	0.73	-0.9
4,165,965	+		PP_3666	0.90	-0.7
4,165,965	+		PP_3666	0.90	-0.2
4,165,980	+				+0.1
4,165,980	+				+2.7
4,165,981	-				-0.5
4,166,084	+				+1.3
4,166,084	+				-0.9
4,166,084	+				-1.3
4,166,085	-				+0.3
4,166,085	-				-0.2
4,166,151	-				-0.1
4,166,151	-				-1.2
4,166,151	-				+0.3
4,166,182	-				+0.4
4,166,182	-				+0.6
4,166,266	-				-2.2
4,166,437	+		PP_3667	0.14	-1.8
4,166,437	+		PP_3667	0.14	-2.6
4,166,437	+		PP_3667	0.14	+0.7
4,166,438	-		PP_3667	0.14	-1.8
4,166,438	-		PP_3667	0.14	+0.3
4,166,438	-		PP_3667	0.14	+0.4
4,166,478	+		PP_3667	0.18	-1.2
4,166,479	-		PP_3667	0.18	+0.1
4,166,481	+		PP_3667	0.18	+1.7
4,166,481	+		PP_3667	0.18	-1.0
4,166,481	+		PP_3667	0.18	-3.7
4,166,703	+		PP_3667	0.36	-1.0
4,166,704	-				-0.9
4,166,704	-		PP_3667	0.36	-0.6
4,166,704	-		PP_3667	0.36	+0.3
4,166,704	-		PP_3667	0.36	-0.6
4,166,901	+		PP_3667	0.53	+0.2
4,166,977	+		PP_3667	0.59	+2.1
4,166,978	-		PP_3667	0.59	-2.7
4,166,978	-		PP_3667	0.59	+0.5
4,167,014	-		PP_3667	0.62	-2.5
4,167,014	-		PP_3667	0.62	-1.0
4,167,057	+		PP_3667	0.65	+0.5
4,167,102	+		PP_3667	0.69	-1.0
4,167,103	-		PP_3667	0.69	+0.5
4,167,103	-		PP_3667	0.69	-0.1
4,167,103	-		PP_3667	0.69	-2.0
4,167,156	+		PP_3667	0.74	-0.0
4,167,157	-		PP_3667	0.74	-1.2
4,167,279	+		PP_3667	0.84	-1.4
4,167,279	+		PP_3667	0.84	+4.3
4,167,300	+		PP_3667	0.85	-0.5
4,167,315	+		PP_3667	0.87	-0.7
4,167,316	-		PP_3667	0.87	+0.7
4,167,318	+		PP_3667	0.87	-0.9
4,167,374	-				-0.4
4,167,375	+				+1.7
4,167,375	+				+0.9
4,167,375	+				+0.1
4,167,375	+				-1.9
4,167,376	-				-0.5
4,167,376	-				-1.1
4,167,376	-				-2.5
4,167,376	-				+2.1
4,167,376	-				-0.9
4,167,376	-				-1.8
4,167,376	-				-0.1
4,167,376	-				+0.3
4,167,376	-				-1.2
4,167,405	+				+1.7
4,167,561	+				-0.4
4,167,562	-				-2.8
4,167,562	-				+0.7
4,167,565	+				-1.5
4,167,566	-				-0.4
4,167,639	-				-1.2
4,167,639	-				+0.1
4,167,728	+				-0.2
4,167,728	+				-1.7
4,167,728	+				+3.3
4,167,728	+				+0.2
4,167,729	-				-0.3
4,167,729	-				-1.4
4,167,729	-				+2.1
4,167,729	-				+0.2
4,167,729	-				-1.0
4,167,779	-				-1.6
4,167,873	+		PP_3668	0.10	-0.3
4,168,058	+		PP_3668	0.19	-0.8
4,168,059	-		PP_3668	0.19	-0.8
4,168,168	+		PP_3668	0.24	+1.4
4,168,169	-		PP_3668	0.24	+1.4
4,168,181	+		PP_3668	0.24	+2.0
4,168,181	+		PP_3668	0.24	+0.1
4,168,182	-		PP_3668	0.24	+0.3