Strain Fitness in Pseudomonas putida KT2440 around PP_3574

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
4,053,902	-		PP_3573	0.36	+0.5
4,054,006	+		PP_3573	0.44	-0.4
4,054,006	+		PP_3573	0.44	+0.6
4,054,007	-		PP_3573	0.44	-0.4
4,054,288	+		PP_3573	0.65	-0.1
4,054,288	+		PP_3573	0.65	+0.2
4,054,288	+		PP_3573	0.65	+0.5
4,054,289	-		PP_3573	0.65	-1.2
4,054,289	-		PP_3573	0.65	+0.8
4,054,318	+		PP_3573	0.68	-0.9
4,054,319	-		PP_3573	0.68	+0.5
4,054,445	+		PP_3573	0.77	-1.8
4,054,445	+		PP_3573	0.77	+3.6
4,054,445	+		PP_3573	0.77	-0.5
4,054,446	-		PP_3573	0.77	-1.8
4,054,446	-		PP_3573	0.77	+0.1
4,054,446	-		PP_3573	0.77	+1.1
4,054,487	+		PP_3573	0.80	+0.1
4,054,488	-		PP_3573	0.80	-0.4
4,054,552	+		PP_3573	0.85	+0.1
4,054,552	+		PP_3573	0.85	-0.7
4,054,751	+				+0.9
4,054,757	+				+3.2
4,054,758	-				-2.2
4,054,758	-				+2.4
4,054,851	+		PP_3574	0.21	-0.7
4,054,851	+		PP_3574	0.21	-2.4
4,054,851	+		PP_3574	0.21	-0.6
4,054,851	+		PP_3574	0.21	-1.1
4,054,851	+		PP_3574	0.21	-1.5
4,054,852	-		PP_3574	0.21	+3.8
4,055,001	+		PP_3574	0.59	+2.9
4,055,001	+		PP_3574	0.59	-1.2
4,055,001	+		PP_3574	0.59	+2.1
4,055,001	+		PP_3574	0.59	-0.9
4,055,001	+		PP_3574	0.59	-0.5
4,055,001	+		PP_3574	0.59	+0.1
4,055,002	-		PP_3574	0.59	-4.2
4,055,257	+				+1.6
4,055,257	+				+4.9
4,055,285	-				+2.1
4,055,285	-				-0.3
4,055,285	-				-3.1
4,055,289	-				-0.9
4,055,351	-				+3.2
4,055,438	-				-0.7
4,055,483	-				-0.7
4,055,603	-		PP_3575	0.14	-2.8
4,055,640	-		PP_3575	0.16	+0.1
4,055,640	-		PP_3575	0.16	-0.3
4,055,641	+		PP_3575	0.16	+0.3
4,055,641	+		PP_3575	0.16	+0.1
4,055,641	+		PP_3575	0.16	+3.3
4,055,641	+		PP_3575	0.16	+2.1
4,055,642	-		PP_3575	0.16	-3.4
4,055,642	-		PP_3575	0.16	+1.1
4,055,642	-		PP_3575	0.16	+1.8
4,055,642	-		PP_3575	0.16	+1.4
4,055,642	-		PP_3575	0.16	+1.5
4,055,818	+		PP_3575	0.23	+4.5
4,055,819	-		PP_3575	0.23	-0.1
4,055,819	-		PP_3575	0.23	-0.0
4,055,923	+		PP_3575	0.28	+0.0
4,055,924	-		PP_3575	0.28	+1.1
4,055,924	-		PP_3575	0.28	+1.6
4,055,924	-		PP_3575	0.28	+2.9
4,055,924	-		PP_3575	0.28	-1.7
4,055,932	+		PP_3575	0.28	+0.6
4,055,933	-				-2.3
4,055,933	-		PP_3575	0.28	-2.5
4,055,933	-		PP_3575	0.28	-1.5
4,055,964	+		PP_3575	0.29	+2.3
4,055,965	-		PP_3575	0.29	+1.8
4,056,101	+		PP_3575	0.35	+0.9