Strain Fitness in Pseudomonas putida KT2440 around PP_3233

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
3,668,865	-		PP_3232	0.21	-0.8
3,668,946	+		PP_3232	0.35	-1.0
3,668,946	+		PP_3232	0.35	+1.3
3,668,946	+		PP_3232	0.35	+0.7
3,668,947	-		PP_3232	0.35	+0.5
3,669,053	+		PP_3232	0.54	-0.0
3,669,285	+				-0.1
3,669,285	+				+0.1
3,669,285	+				+0.4
3,669,285	+				-1.2
3,669,286	-				-2.1
3,669,286	-				-0.7
3,669,286	-				+1.0
3,669,289	+				+1.8
3,669,438	-				-1.7
3,669,438	-				-0.6
3,669,471	+				+1.0
3,669,471	+				-0.8
3,669,472	-				+1.0
3,669,472	-				+0.3
3,669,674	-				-0.5
3,669,774	+				+0.4
3,669,774	+				-0.4
3,669,775	-				-1.3
3,669,860	+		PP_3233	0.21	+1.0
3,669,860	+		PP_3233	0.21	-0.3
3,670,001	-		PP_3233	0.40	-0.8
3,670,229	+		PP_3233	0.71	-0.1
3,670,295	+		PP_3233	0.80	+2.3
3,670,296	-		PP_3233	0.80	+0.6
3,670,306	+		PP_3233	0.82	+0.0
3,670,459	+				+2.8
3,670,459	+				-1.4
3,670,548	+		PP_5591	0.19	+0.0
3,670,549	-		PP_5591	0.20	+0.6
3,670,549	-		PP_5591	0.20	+0.9
3,670,609	+		PP_5591	0.28	-0.7
3,670,610	-		PP_5591	0.28	+0.0
3,670,610	-		PP_5591	0.28	+0.6
3,670,684	-		PP_5591	0.38	-0.4
3,670,841	+		PP_5591	0.60	-2.2
3,670,841	+		PP_5591	0.60	-0.8
3,670,841	+		PP_5591	0.60	-1.2
3,670,842	-		PP_5591	0.60	+0.3
3,670,842	-		PP_5591	0.60	-0.6
3,671,014	+				-1.6
3,671,015	-		PP_5591	0.84	+5.3
3,671,015	-		PP_5591	0.84	+0.5
3,671,173	+				-1.0
3,671,174	-				-1.5
3,671,303	-		PP_3234	0.15	-0.5