Strain Fitness in Pseudomonas putida KT2440 around PP_2927

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
3,327,583	+		PP_2926	0.53	-0.6
3,327,583	+		PP_2926	0.53	-0.1
3,327,584	-		PP_2926	0.53	+0.5
3,327,584	-		PP_2926	0.53	-0.7
3,327,584	-		PP_2926	0.53	+0.1
3,327,652	+		PP_2926	0.58	-3.5
3,327,653	-		PP_2926	0.58	+2.0
3,327,653	-		PP_2926	0.58	-2.6
3,327,830	+		PP_2926	0.72	-2.3
3,327,929	+		PP_2926	0.79	-0.5
3,327,929	+		PP_2926	0.79	-1.1
3,327,930	-		PP_2926	0.79	+1.4
3,327,950	+		PP_2926	0.81	-0.9
3,327,951	-		PP_2926	0.81	+0.5
3,327,979	+		PP_2926	0.83	-1.9
3,327,979	+		PP_2926	0.83	+0.2
3,327,980	-		PP_2926	0.83	-0.7
3,327,980	-		PP_2926	0.83	-0.3
3,328,141	-				-0.7
3,328,177	+				+2.7
3,328,256	-				+1.8
3,328,291	+				+0.5
3,328,327	+				+0.8
3,328,334	-				+0.3
3,328,663	+		PP_2927	0.20	-1.5
3,328,741	+		PP_2927	0.28	+0.2
3,328,741	+		PP_2927	0.28	-0.3
3,328,741	+		PP_2927	0.28	+1.1
3,328,742	-		PP_2927	0.28	+2.2
3,329,047	+		PP_2927	0.57	+2.9
3,329,225	-		PP_2927	0.74	+0.6
3,329,225	-		PP_2927	0.74	+0.6
3,329,269	+		PP_2927	0.78	+1.4
3,329,320	+				+0.7
3,329,321	-		PP_2927	0.83	+1.3
3,329,337	+		PP_2927	0.85	+2.2
3,329,494	+				-3.5
3,329,629	-				+0.4
3,329,798	+		PP_2928	0.14	-3.1
3,329,868	+		PP_2928	0.19	-0.1
3,329,868	+		PP_2928	0.19	-3.5
3,329,869	-		PP_2928	0.19	-0.5
3,329,869	-		PP_2928	0.19	+0.1
3,329,869	-		PP_2928	0.19	+0.1
3,330,079	-		PP_2928	0.36	+0.5
3,330,079	-		PP_2928	0.36	-1.3
3,330,079	-		PP_2928	0.36	+0.1
3,330,079	-		PP_2928	0.36	-0.6
3,330,079	-		PP_2928	0.36	-0.9
3,330,165	+		PP_2928	0.43	-1.0
3,330,166	-		PP_2928	0.43	-2.0
3,330,182	+		PP_2928	0.45	-4.3
3,330,202	+		PP_2928	0.46	+0.9
3,330,312	+		PP_2928	0.55	+0.9
3,330,347	-		PP_2928	0.58	-0.9
3,330,347	-				-2.7
3,330,396	+		PP_2928	0.62	+0.1
3,330,397	-		PP_2928	0.62	-1.8
3,330,443	-		PP_2928	0.66	+2.7
3,330,483	+		PP_2928	0.69	+0.1
3,330,484	-		PP_2928	0.69	+0.1
3,330,492	+		PP_2928	0.69	-1.9