Strain Fitness in Pseudomonas putida KT2440 around PP_2769

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
3,151,897	+				-1.3
3,151,897	+				-0.2
3,151,897	+				-0.1
3,151,897	+				-1.3
3,151,898	-				+1.1
3,151,922	+				+0.2
3,151,931	-				-2.6
3,151,931	-				-0.9
3,151,974	-		PP_2768	0.15	-0.7
3,152,152	+		PP_2768	0.35	-0.4
3,152,153	-		PP_2768	0.35	+4.5
3,152,153	-		PP_2768	0.35	+0.3
3,152,153	-		PP_2768	0.35	-0.9
3,152,542	-		PP_2768	0.79	-0.2
3,152,609	-		PP_2768	0.87	+0.1
3,152,654	-				-0.9
3,152,909	+		PP_2769	0.17	-1.0
3,152,910	-		PP_2769	0.17	+1.0
3,152,910	-		PP_2769	0.17	+0.3
3,152,996	+		PP_2769	0.26	+0.5
3,153,013	+		PP_2769	0.28	+1.8
3,153,014	-		PP_2769	0.28	+0.2
3,153,015	+		PP_2769	0.28	+1.7
3,153,133	+		PP_2769	0.40	-0.9
3,153,134	-		PP_2769	0.40	+1.7
3,153,377	-		PP_2769	0.64	+1.2
3,153,412	+		PP_2769	0.68	-0.3
3,153,413	-		PP_2769	0.68	+2.1
3,153,481	-		PP_2769	0.75	-0.7
3,153,603	-		PP_2769	0.87	+0.6
3,153,603	-		PP_2769	0.87	+0.1
3,153,782	+				+0.2
3,153,788	-				-0.3
3,153,843	+				-2.5
3,153,843	+				-2.5
3,153,843	+				+3.8
3,153,844	-				-0.3
3,153,844	-				+1.1
3,153,885	-				-1.0
3,153,885	-				-0.3
3,153,918	-				-0.4
3,153,918	-				+3.1
3,153,918	-				-1.9
3,153,959	+		PP_2770	0.12	-0.1
3,153,968	+		PP_2770	0.13	+2.7
3,154,059	-		PP_2770	0.20	+0.2
3,154,130	+		PP_2770	0.25	-0.5
3,154,131	-		PP_2770	0.25	-0.9
3,154,223	+		PP_2770	0.32	-1.2
3,154,224	-		PP_2770	0.32	-0.8
3,154,224	-		PP_2770	0.32	-1.2
3,154,261	-		PP_2770	0.35	-0.4
3,154,398	-		PP_2770	0.45	+1.2
3,154,398	-		PP_2770	0.45	+0.4