Strain Fitness in Pseudomonas putida KT2440 around PP_2655

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
3,042,059	-				+0.1
3,042,064	+				+0.3
3,042,065	-				-1.9
3,042,095	+				-0.7
3,042,095	+				-2.7
3,042,095	+				+0.1
3,042,095	+				+0.8
3,042,095	+				-0.7
3,042,095	+				+2.1
3,042,096	-				+0.1
3,042,096	-				+3.6
3,042,097	+				-0.3
3,042,098	-				-0.2
3,042,126	+				-0.5
3,042,147	-		PP_5537	0.16	+1.6
3,042,326	+		PP_5537	0.72	-0.5
3,042,326	+		PP_5537	0.72	+1.2
3,042,371	+		PP_5537	0.87	+0.6
3,042,372	-		PP_5537	0.87	+1.1
3,042,431	-				+3.1
3,042,581	+		PP_2654	0.40	-2.9
3,042,582	-		PP_2654	0.41	-1.4
3,042,582	-		PP_2654	0.41	+1.1
3,042,582	-		PP_2654	0.41	+0.6
3,042,596	+		PP_2654	0.44	-0.4
3,042,597	-		PP_2654	0.44	+0.3
3,042,683	+		PP_2654	0.64	-1.7
3,042,683	+		PP_2654	0.64	-1.1
3,042,684	-		PP_2654	0.65	-1.7
3,042,684	-		PP_2654	0.65	-2.1
3,042,684	-		PP_2654	0.65	+4.3
3,042,734	-		PP_2654	0.76	-0.8
3,042,734	-		PP_2654	0.76	-2.8
3,042,769	+		PP_2654	0.85	+1.2
3,042,872	+				-1.2
3,042,878	+				-0.1
3,042,878	+				-1.6
3,042,881	+				-2.9
3,042,888	+				-0.8
3,042,963	+		PP_2655	0.24	+0.5
3,042,964	-		PP_2655	0.25	-0.7
3,042,964	-		PP_2655	0.25	+0.7
3,043,005	+				+0.1
3,043,014	+		PP_2655	0.46	+1.4
3,043,116	-				-0.3
3,043,188	+				-1.4
3,043,266	-				-0.1
3,043,266	-				-0.5
3,043,534	+		PP_2656	0.18	-0.5
3,043,534	+		PP_2656	0.18	-1.1
3,043,535	-		PP_2656	0.18	+1.4
3,043,691	-		PP_2656	0.33	+1.3
3,043,710	+		PP_2656	0.35	+0.6
3,043,710	+		PP_2656	0.35	-0.3
3,043,738	+		PP_2656	0.38	+0.7
3,043,746	+		PP_2656	0.39	+1.4
3,044,027	-		PP_2656	0.65	-2.3
3,044,095	+		PP_2656	0.72	+0.1
3,044,096	-		PP_2656	0.72	-0.6
3,044,096	-		PP_2656	0.72	+3.4
3,044,099	+		PP_2656	0.72	-1.8