Strain Fitness in Pseudomonas putida KT2440 around PP_2442

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
2,788,702	-		PP_2440	0.66	-2.7
2,788,702	-				+0.1
2,789,141	+				-1.0
2,789,142	-				+1.0
2,789,151	+				+0.1
2,789,238	+				-0.6
2,789,238	+				-0.2
2,789,316	-				+0.6
2,789,373	+				-1.9
2,789,374	-				-1.3
2,789,374	-				-0.9
2,789,374	-				+3.7
2,789,374	-				-2.9
2,789,439	-		PP_2441	0.17	+1.1
2,789,439	-		PP_2441	0.17	-1.1
2,789,439	-		PP_2441	0.17	-2.1
2,789,766	+		PP_2442	0.26	-1.9
2,789,767	-		PP_2442	0.26	-2.7
2,790,284	-				-0.7
2,790,284	-				-0.3
2,790,284	-				-0.9
2,790,287	+				+0.1
2,790,287	+				+1.5
2,790,287	+				-0.8
2,790,288	-				+2.9
2,790,288	-				+0.2
2,790,288	-				-2.2
2,790,288	-				-0.9
2,790,288	-				-2.2
2,790,288	-				-0.7
2,790,288	-				+2.7
2,790,288	-				+0.0
2,790,300	+				+0.9
2,790,301	-				+1.1
2,790,337	+				+0.4
2,790,614	+		PP_2443	0.23	+0.0
2,790,641	+		PP_2443	0.25	-1.3
2,790,700	+		PP_2443	0.30	-0.6
2,790,700	+		PP_2443	0.30	-2.9
2,790,700	+		PP_2443	0.30	+0.6
2,790,701	-		PP_2443	0.30	+0.1
2,790,701	-		PP_2443	0.30	-0.1
2,790,701	-		PP_2443	0.30	-1.0
2,790,785	+		PP_2443	0.37	+0.8
2,790,785	+		PP_2443	0.37	-0.8
2,790,901	-		PP_2443	0.47	-0.9
2,791,008	+		PP_2443	0.55	+4.4
2,791,020	+		PP_2443	0.56	+1.4
2,791,227	+		PP_2443	0.74	+0.1