Strain Fitness in Pseudomonas putida KT2440 around PP_2425

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
2,770,980	-		PP_2423	0.82	-0.4
2,770,980	-		PP_2423	0.82	-1.1
2,771,009	+		PP_2423	0.85	+0.2
2,771,009	+		PP_2423	0.85	+0.2
2,771,009	+		PP_2423	0.85	-0.3
2,771,099	+				-1.5
2,771,100	-				-0.8
2,771,100	-				+0.5
2,771,100	-				-0.9
2,771,121	+				+0.3
2,771,121	+				+1.2
2,771,122	-				-0.8
2,771,122	-				+0.5
2,771,125	+				+0.2
2,771,125	+				+1.1
2,771,125	+				-1.4
2,771,126	-				+0.8
2,771,150	+				+4.1
2,771,150	+				-0.3
2,771,150	+				+0.7
2,771,150	+				-1.4
2,771,150	+				-2.1
2,771,150	+				-0.7
2,771,151	-				+3.0
2,771,203	-				+1.5
2,771,223	+				-0.7
2,771,223	+				-0.5
2,771,223	+				-0.7
2,771,223	+				-0.3
2,771,224	-				-0.8
2,771,224	-				+0.5
2,771,224	-				-0.4
2,771,230	-				+0.2
2,771,255	+				-3.6
2,771,255	+				-0.4
2,771,256	-				-4.2
2,771,256	-				+0.4
2,771,256	-				-0.1
2,771,256	-				+0.2
2,771,256	-				+3.3
2,771,256	-				-1.2
2,771,258	+				+0.3
2,771,258	+				-0.9
2,771,258	+				-1.2
2,771,258	+				-0.6
2,771,300	+				-1.2
2,771,300	+				+1.3
2,771,300	+				-1.8
2,771,300	+				+2.5
2,771,312	+				-4.0
2,771,312	+				+0.4
2,771,314	+				-2.4
2,771,314	+				+0.4
2,771,314	+				+1.8
2,771,315	-				+2.2
2,771,315	-				+0.1
2,771,315	-				+2.4
2,771,315	-				+1.2
2,771,315	-				+0.9
2,771,315	-				-0.2
2,771,315	-				-0.6
2,771,315	-				-0.0
2,771,476	+		PP_2424	0.32	-0.7
2,771,476	+		PP_2424	0.32	-0.8
2,771,476	+		PP_2424	0.32	+0.6
2,771,476	+		PP_2424	0.32	+2.3
2,771,476	+		PP_2424	0.32	-0.5
2,771,476	+		PP_2424	0.32	+0.2
2,771,477	-		PP_2424	0.32	-0.7
2,771,477	-		PP_2424	0.32	-1.2
2,771,477	-		PP_2424	0.32	+0.7
2,771,477	-		PP_2424	0.32	+3.0
2,771,637	+		PP_2424	0.62	+0.5
2,771,638	-		PP_2424	0.62	+0.2
2,771,763	+		PP_2424	0.85	+1.5
2,771,790	+		PP_2424	0.90	-0.4
2,771,881	+				+1.6
2,771,881	+				-0.0
2,771,882	-				-4.1
2,771,882	-				+0.3
2,771,912	-				+1.0
2,771,912	-				-2.3
2,771,929	+				+0.7
2,771,930	-				+0.2
2,771,938	+				+0.2
2,771,972	-				+0.3
2,772,001	+		PP_2425	0.10	-1.1
2,772,194	-		PP_2425	0.31	-2.1
2,772,298	+		PP_2425	0.43	+2.5
2,772,331	-		PP_2425	0.46	-0.9
2,772,584	-		PP_2425	0.74	-0.8
2,772,584	-		PP_2425	0.74	-0.6
2,772,598	+		PP_2425	0.76	+0.9
2,772,598	+		PP_2425	0.76	-0.6
2,772,598	+		PP_2425	0.76	-0.2
2,772,691	+		PP_2425	0.86	-1.1
2,772,691	+		PP_2425	0.86	+1.2
2,772,692	-		PP_2425	0.86	-0.5
2,772,692	-		PP_2425	0.86	-1.5
2,772,692	-		PP_2425	0.86	-0.0
2,772,692	-		PP_2425	0.86	+2.2
2,772,692	-		PP_2425	0.86	-1.2
2,772,897	-				+2.3
2,773,000	+				+0.1
2,773,001	-				+0.2
2,773,001	-				+0.2
2,773,001	-				+1.4
2,773,106	-		PP_2426	0.10	+0.0
2,773,106	-		PP_2426	0.10	+0.0
2,773,316	-		PP_2426	0.30	-3.0
2,773,343	-		PP_2426	0.33	-0.3
2,773,343	-		PP_2426	0.33	-1.1
2,773,489	+		PP_2426	0.47	-0.8
2,773,489	+		PP_2426	0.47	+0.2
2,773,489	+		PP_2426	0.47	+0.2