Strain Fitness in Pseudomonas putida KT2440 around PP_2023

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
2,294,913	+		PP_2021	0.52	+1.8
2,294,913	+		PP_2021	0.52	+0.5
2,294,914	-		PP_2021	0.52	-0.6
2,294,914	-		PP_2021	0.52	-0.1
2,295,034	-		PP_2021	0.63	-0.4
2,295,186	+		PP_2021	0.76	-0.7
2,295,186	+		PP_2021	0.76	+0.2
2,295,186	+		PP_2021	0.76	-0.1
2,295,187	-		PP_2021	0.76	-0.8
2,295,367	+				-0.8
2,295,367	+				+0.4
2,295,367	+				+1.4
2,295,368	-				-0.1
2,295,368	-				-2.0
2,295,368	-				-3.9
2,295,472	-				-0.9
2,295,478	+				-0.0
2,295,570	-				-0.2
2,295,602	-		PP_5496	0.14	+0.3
2,295,686	+		PP_5496	0.61	-0.8
2,295,686	+		PP_5496	0.61	+1.4
2,295,687	-		PP_5496	0.62	-0.7
2,295,699	-		PP_5496	0.68	+0.5
2,296,057	-		PP_2023	0.28	-1.8
2,296,158	+				-0.8
2,296,158	+		PP_2023	0.45	+0.2
2,296,158	+		PP_2023	0.45	+0.8
2,296,158	+		PP_2023	0.45	+1.2
2,296,242	-		PP_2023	0.59	+1.2
2,296,562	-				+0.7
2,296,864	+		PP_2024	0.11	+0.2
2,296,864	+		PP_2024	0.11	+0.7
2,296,864	+		PP_2024	0.11	-0.1
2,296,865	-		PP_2024	0.11	+1.8
2,296,865	-		PP_2024	0.11	-0.8
2,296,904	+		PP_2024	0.12	-1.1
2,296,904	+		PP_2024	0.12	-1.4
2,296,904	+		PP_2024	0.12	+0.2
2,296,905	-		PP_2024	0.12	-2.8