Strain Fitness in Pseudomonas putida KT2440 around PP_1955

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
2,210,879	+		PP_1954	0.23	+0.3
2,210,896	+		PP_1954	0.25	+0.3
2,210,896	+		PP_1954	0.25	-0.1
2,210,896	+		PP_1954	0.25	+0.7
2,210,897	-		PP_1954	0.25	+0.8
2,210,897	-		PP_1954	0.25	+1.2
2,210,897	-		PP_1954	0.25	-2.0
2,211,067	+				+0.2
2,211,068	-		PP_1954	0.39	+2.9
2,211,092	+		PP_1954	0.41	+1.3
2,211,092	+		PP_1954	0.41	-0.3
2,211,093	-		PP_1954	0.41	+0.2
2,211,093	-		PP_1954	0.41	+1.2
2,211,124	+		PP_1954	0.44	+0.4
2,211,124	+		PP_1954	0.44	-0.4
2,211,124	+		PP_1954	0.44	-1.6
2,211,124	+		PP_1954	0.44	+0.9
2,211,125	-		PP_1954	0.44	-1.3
2,211,125	-		PP_1954	0.44	-1.1
2,211,125	-		PP_1954	0.44	-1.1
2,211,203	+		PP_1954	0.51	-2.4
2,211,203	+		PP_1954	0.51	-0.2
2,211,291	-		PP_1954	0.58	-0.4
2,211,291	-		PP_1954	0.58	+4.3
2,211,382	+		PP_1954	0.66	+0.4
2,211,382	+		PP_1954	0.66	-0.1
2,211,382	+		PP_1954	0.66	-2.4
2,211,382	+		PP_1954	0.66	-0.3
2,211,382	+		PP_1954	0.66	+0.4
2,211,382	+		PP_1954	0.66	-1.0
2,211,383	-		PP_1954	0.66	-0.5
2,211,383	-		PP_1954	0.66	-1.6
2,211,451	+		PP_1954	0.72	-0.8
2,211,464	+		PP_1954	0.73	+0.1
2,211,464	+		PP_1954	0.73	-1.4
2,211,465	-		PP_1954	0.73	-1.5
2,211,465	-		PP_1954	0.73	+0.2
2,211,472	+		PP_1954	0.74	+0.0
2,211,472	+		PP_1954	0.74	-3.2
2,211,473	-		PP_1954	0.74	+0.2
2,211,473	-		PP_1954	0.74	+1.6
2,211,501	+				+1.2
2,211,511	+		PP_1954	0.77	-2.0
2,211,511	+		PP_1954	0.77	-0.4
2,211,512	-		PP_1954	0.77	-1.3
2,211,512	-		PP_1954	0.77	-0.1
2,211,512	-		PP_1954	0.77	+0.1
2,211,812	-				-2.4
2,211,815	+				+1.9
2,211,876	+				+0.5
2,211,986	+				-4.1
2,211,986	+				-2.5
2,211,996	+		PP_1955	0.10	+0.8
2,212,072	+		PP_1955	0.16	-2.2
2,212,073	-		PP_1955	0.17	-2.6
2,212,298	+		PP_1955	0.35	-0.8
2,212,299	-		PP_1955	0.35	-0.2
2,212,338	-		PP_1955	0.38	-0.6
2,212,376	-		PP_1955	0.41	-1.2
2,212,412	+		PP_1955	0.44	-0.5
2,212,413	-		PP_1955	0.44	+0.8
2,212,413	-		PP_1955	0.44	-1.5
2,212,457	+		PP_1955	0.48	-0.3
2,212,457	+		PP_1955	0.48	+1.2
2,212,457	+		PP_1955	0.48	+0.2
2,212,458	-		PP_1955	0.48	-1.3
2,212,458	-		PP_1955	0.48	-0.7
2,212,458	-		PP_1955	0.48	-1.4
2,212,475	+		PP_1955	0.49	-0.4
2,212,482	-		PP_1955	0.50	-1.3
2,212,836	+		PP_1955	0.78	+3.8
2,212,836	+				+1.4
2,212,837	-		PP_1955	0.78	-1.6
2,212,837	-		PP_1955	0.78	-1.2
2,212,855	+		PP_1955	0.80	+0.4
2,212,930	+				-2.1
2,212,945	+		PP_1955	0.87	-3.5
2,212,945	+		PP_1955	0.87	-0.9
2,212,946	-		PP_1955	0.87	-1.2
2,213,076	+				+1.2
2,213,127	+				-2.1
2,213,128	-				+0.3
2,213,130	+				-2.4
2,213,183	+				-0.8
2,213,184	-				+0.9
2,213,234	+				+0.2
2,213,383	+		PP_1956	0.21	-3.8
2,213,383	+		PP_1956	0.21	-0.9
2,213,384	-		PP_1956	0.22	+0.8
2,213,384	-		PP_1956	0.22	+3.2
2,213,434	-		PP_1956	0.27	-0.3
2,213,446	+		PP_1956	0.28	-0.7
2,213,484	+		PP_1956	0.32	+1.0
2,213,484	+		PP_1956	0.32	-2.4
2,213,484	+		PP_1956	0.32	-3.1
2,213,632	+		PP_1956	0.47	-1.5
2,213,633	-		PP_1956	0.47	-1.3
2,213,746	-		PP_1956	0.59	+1.4
2,213,821	-		PP_1956	0.67	+0.2
2,213,821	-		PP_1956	0.67	+2.3
2,213,909	-		PP_1956	0.76	-1.2
2,213,973	-		PP_1956	0.82	-1.4
2,214,021	+		PP_1956	0.87	-0.8
2,214,031	+		PP_1956	0.88	-2.1