Strain Fitness in Pseudomonas putida KT2440 around PP_1684

Experiment: pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1682 and PP_1683 are separated by 62 nucleotidesPP_1683 and PP_1684 are separated by 44 nucleotidesPP_1684 and PP_1685 overlap by 4 nucleotidesPP_1685 and PP_1686 overlap by 11 nucleotidesPP_1686 and PP_1687 are separated by 135 nucleotides PP_1682: PP_1682 - putative glycoside hydrolase family protein, at 1,876,186 to 1,877,367 _1682 PP_1683: PP_1683 - Transcriptional regulator, MarR family, at 1,877,430 to 1,877,834 _1683 PP_1684: PP_1684 - putative Transporter, at 1,877,879 to 1,879,099 _1684 PP_1685: PP_1685 - conserved exported protein of unknown function, at 1,879,096 to 1,879,218 _1685 PP_1686: PP_1686 - Glutathione peroxidase, at 1,879,208 to 1,879,816 _1686 PP_1687: PP_1687 - conserved exported protein of unknown function, at 1,879,952 to 1,880,251 _1687 Position (kb) 1877 1878 1879 1880Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1876.910 kb on - strand, within PP_1682at 1876.910 kb on - strand, within PP_1682at 1876.924 kb on + strand, within PP_1682at 1876.924 kb on + strand, within PP_1682at 1876.924 kb on + strand, within PP_1682at 1876.924 kb on + strand, within PP_1682at 1876.924 kb on + strand, within PP_1682at 1876.924 kb on + strand, within PP_1682at 1876.924 kb on + strand, within PP_1682at 1876.924 kb on + strand, within PP_1682at 1876.924 kb on + strand, within PP_1682at 1876.924 kb on + strand, within PP_1682at 1876.924 kb on + strand, within PP_1682at 1876.924 kb on + strand, within PP_1682at 1876.925 kb on - strand, within PP_1682at 1876.925 kb on - strandat 1876.925 kb on - strand, within PP_1682at 1876.925 kb on - strand, within PP_1682at 1876.925 kb on - strand, within PP_1682at 1877.045 kb on - strand, within PP_1682at 1877.149 kb on + strand, within PP_1682at 1877.162 kb on + strand, within PP_1682at 1877.162 kb on + strand, within PP_1682at 1877.162 kb on + strand, within PP_1682at 1877.163 kb on - strand, within PP_1682at 1877.163 kb on - strand, within PP_1682at 1877.163 kb on - strand, within PP_1682at 1877.163 kb on - strand, within PP_1682at 1877.203 kb on + strand, within PP_1682at 1877.203 kb on + strand, within PP_1682at 1877.203 kb on + strand, within PP_1682at 1877.204 kb on - strand, within PP_1682at 1877.204 kb on - strand, within PP_1682at 1877.204 kb on - strand, within PP_1682at 1877.204 kb on - strand, within PP_1682at 1877.204 kb on - strand, within PP_1682at 1877.204 kb on - strand, within PP_1682at 1877.204 kb on - strand, within PP_1682at 1877.205 kb on + strand, within PP_1682at 1877.206 kb on - strand, within PP_1682at 1877.206 kb on - strand, within PP_1682at 1877.239 kb on + strand, within PP_1682at 1877.240 kb on - strand, within PP_1682at 1877.417 kb on + strandat 1877.418 kb on - strandat 1877.420 kb on - strandat 1877.454 kb on - strandat 1877.493 kb on + strandat 1877.616 kb on - strand, within PP_1683at 1877.659 kb on + strand, within PP_1683at 1877.718 kb on - strand, within PP_1683at 1877.890 kb on - strandat 1877.950 kb on - strandat 1877.971 kb on - strandat 1878.149 kb on + strand, within PP_1684at 1878.150 kb on - strandat 1878.408 kb on + strand, within PP_1684at 1878.579 kb on + strand, within PP_1684at 1878.579 kb on + strand, within PP_1684at 1878.606 kb on - strand, within PP_1684at 1878.606 kb on - strand, within PP_1684at 1878.744 kb on - strand, within PP_1684at 1878.744 kb on - strand, within PP_1684at 1878.806 kb on + strand, within PP_1684at 1878.807 kb on - strand, within PP_1684at 1878.807 kb on - strand, within PP_1684at 1878.807 kb on - strand, within PP_1684at 1878.832 kb on - strand, within PP_1684at 1878.832 kb on - strand, within PP_1684at 1878.975 kb on - strand, within PP_1684at 1878.975 kb on - strand, within PP_1684at 1878.975 kb on - strand, within PP_1684at 1878.975 kb on - strand, within PP_1684at 1878.975 kb on - strand, within PP_1684at 1878.992 kb on + strandat 1878.992 kb on + strandat 1878.992 kb on + strandat 1878.992 kb on + strandat 1878.993 kb on - strandat 1878.993 kb on - strandat 1879.046 kb on - strandat 1879.095 kb on + strandat 1879.095 kb on + strandat 1879.096 kb on - strandat 1879.096 kb on - strandat 1879.105 kb on + strandat 1879.106 kb on - strandat 1879.128 kb on + strand, within PP_1685at 1879.216 kb on + strandat 1879.312 kb on + strand, within PP_1686at 1879.313 kb on - strand, within PP_1686at 1879.442 kb on + strand, within PP_1686at 1879.443 kb on - strand, within PP_1686at 1879.484 kb on + strand, within PP_1686at 1879.484 kb on + strand, within PP_1686at 1879.485 kb on - strand, within PP_1686at 1879.485 kb on - strand, within PP_1686at 1879.485 kb on - strand, within PP_1686at 1879.485 kb on - strand, within PP_1686at 1879.493 kb on + strand, within PP_1686at 1879.493 kb on + strand, within PP_1686at 1879.494 kb on - strand, within PP_1686at 1879.584 kb on - strand, within PP_1686at 1879.592 kb on + strand, within PP_1686at 1879.592 kb on + strand, within PP_1686at 1879.592 kb on + strand, within PP_1686at 1879.593 kb on - strand, within PP_1686at 1879.593 kb on - strand, within PP_1686at 1879.593 kb on - strand, within PP_1686at 1879.593 kb on - strand, within PP_1686at 1879.593 kb on - strand, within PP_1686at 1879.593 kb on - strand, within PP_1686at 1879.593 kb on - strand, within PP_1686at 1879.700 kb on + strand, within PP_1686at 1879.706 kb on + strand, within PP_1686at 1879.706 kb on + strand, within PP_1686at 1879.706 kb on + strand, within PP_1686at 1879.706 kb on + strand, within PP_1686at 1879.706 kb on + strand, within PP_1686at 1879.706 kb on + strand, within PP_1686at 1879.707 kb on - strand, within PP_1686at 1879.707 kb on - strand, within PP_1686at 1879.707 kb on - strand, within PP_1686at 1879.970 kb on - strandat 1879.973 kb on - strandat 1880.043 kb on + strand, within PP_1687at 1880.044 kb on - strand, within PP_1687at 1880.067 kb on + strand, within PP_1687at 1880.067 kb on + strand, within PP_1687at 1880.067 kb on + strand, within PP_1687at 1880.067 kb on + strand, within PP_1687at 1880.067 kb on + strand, within PP_1687at 1880.068 kb on - strand, within PP_1687at 1880.068 kb on - strand, within PP_1687at 1880.068 kb on - strand, within PP_1687at 1880.068 kb on - strand, within PP_1687at 1880.068 kb on - strand, within PP_1687

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Per-strain Table

Position Strand Gene LocusTag Fraction pH 4
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1,876,910 - PP_1682 0.61 +0.5
1,876,910 - PP_1682 0.61 +2.2
1,876,924 + PP_1682 0.62 -2.0
1,876,924 + PP_1682 0.62 -1.2
1,876,924 + PP_1682 0.62 +2.3
1,876,924 + PP_1682 0.62 -0.6
1,876,924 + PP_1682 0.62 -0.3
1,876,924 + PP_1682 0.62 -0.4
1,876,924 + PP_1682 0.62 -0.1
1,876,924 + PP_1682 0.62 +0.5
1,876,924 + PP_1682 0.62 -0.3
1,876,924 + PP_1682 0.62 +0.5
1,876,924 + PP_1682 0.62 +0.9
1,876,924 + PP_1682 0.62 -3.5
1,876,925 - PP_1682 0.63 -3.1
1,876,925 - +0.2
1,876,925 - PP_1682 0.63 +0.8
1,876,925 - PP_1682 0.63 +0.2
1,876,925 - PP_1682 0.63 -1.2
1,877,045 - PP_1682 0.73 -0.3
1,877,149 + PP_1682 0.81 +1.2
1,877,162 + PP_1682 0.83 -2.3
1,877,162 + PP_1682 0.83 -0.8
1,877,162 + PP_1682 0.83 -2.3
1,877,163 - PP_1682 0.83 -2.2
1,877,163 - PP_1682 0.83 -1.5
1,877,163 - PP_1682 0.83 +1.4
1,877,163 - PP_1682 0.83 -2.1
1,877,203 + PP_1682 0.86 -0.3
1,877,203 + PP_1682 0.86 +0.2
1,877,203 + PP_1682 0.86 -1.3
1,877,204 - PP_1682 0.86 +2.0
1,877,204 - PP_1682 0.86 -0.4
1,877,204 - PP_1682 0.86 -2.1
1,877,204 - PP_1682 0.86 +1.2
1,877,204 - PP_1682 0.86 +0.2
1,877,204 - PP_1682 0.86 +2.8
1,877,204 - PP_1682 0.86 +0.6
1,877,205 + PP_1682 0.86 +0.4
1,877,206 - PP_1682 0.86 +0.5
1,877,206 - PP_1682 0.86 +0.2
1,877,239 + PP_1682 0.89 +1.0
1,877,240 - PP_1682 0.89 -0.3
1,877,417 + -0.4
1,877,418 - -1.6
1,877,420 - +4.4
1,877,454 - -0.5
1,877,493 + +0.2
1,877,616 - PP_1683 0.46 +1.5
1,877,659 + PP_1683 0.57 -0.8
1,877,718 - PP_1683 0.71 -2.2
1,877,890 - +0.2
1,877,950 - +1.0
1,877,971 - -0.3
1,878,149 + PP_1684 0.22 +0.1
1,878,150 - +1.8
1,878,408 + PP_1684 0.43 +0.0
1,878,579 + PP_1684 0.57 +1.8
1,878,579 + PP_1684 0.57 +3.9
1,878,606 - PP_1684 0.60 -0.3
1,878,606 - PP_1684 0.60 -3.3
1,878,744 - PP_1684 0.71 -2.9
1,878,744 - PP_1684 0.71 +1.5
1,878,806 + PP_1684 0.76 +0.5
1,878,807 - PP_1684 0.76 +0.0
1,878,807 - PP_1684 0.76 +0.4
1,878,807 - PP_1684 0.76 +1.0
1,878,832 - PP_1684 0.78 +1.7
1,878,832 - PP_1684 0.78 -0.1
1,878,975 - PP_1684 0.90 +1.0
1,878,975 - PP_1684 0.90 +1.1
1,878,975 - PP_1684 0.90 -0.6
1,878,975 - PP_1684 0.90 +3.6
1,878,975 - PP_1684 0.90 +3.1
1,878,992 + +2.6
1,878,992 + +1.8
1,878,992 + +1.2
1,878,992 + -1.8
1,878,993 - +1.3
1,878,993 - -0.5
1,879,046 - -2.8
1,879,095 + -1.3
1,879,095 + -2.1
1,879,096 - -0.8
1,879,096 - +0.7
1,879,105 + +0.2
1,879,106 - -0.7
1,879,128 + PP_1685 0.26 -0.5
1,879,216 + +0.2
1,879,312 + PP_1686 0.17 -0.7
1,879,313 - PP_1686 0.17 -1.6
1,879,442 + PP_1686 0.38 +0.1
1,879,443 - PP_1686 0.39 -0.9
1,879,484 + PP_1686 0.45 -0.9
1,879,484 + PP_1686 0.45 -1.1
1,879,485 - PP_1686 0.45 -0.7
1,879,485 - PP_1686 0.45 +1.9
1,879,485 - PP_1686 0.45 +1.1
1,879,485 - PP_1686 0.45 +1.7
1,879,493 + PP_1686 0.47 -0.1
1,879,493 + PP_1686 0.47 -1.3
1,879,494 - PP_1686 0.47 +0.8
1,879,584 - PP_1686 0.62 +0.2
1,879,592 + PP_1686 0.63 +1.2
1,879,592 + PP_1686 0.63 -0.3
1,879,592 + PP_1686 0.63 +0.2
1,879,593 - PP_1686 0.63 +2.6
1,879,593 - PP_1686 0.63 +0.6
1,879,593 - PP_1686 0.63 +4.0
1,879,593 - PP_1686 0.63 -3.6
1,879,593 - PP_1686 0.63 -0.5
1,879,593 - PP_1686 0.63 +0.1
1,879,593 - PP_1686 0.63 +1.2
1,879,700 + PP_1686 0.81 +1.2
1,879,706 + PP_1686 0.82 +0.7
1,879,706 + PP_1686 0.82 -1.1
1,879,706 + PP_1686 0.82 +0.1
1,879,706 + PP_1686 0.82 +1.6
1,879,706 + PP_1686 0.82 -0.9
1,879,706 + PP_1686 0.82 -2.1
1,879,707 - PP_1686 0.82 -0.6
1,879,707 - PP_1686 0.82 +1.0
1,879,707 - PP_1686 0.82 -0.3
1,879,970 - +0.2
1,879,973 - +1.5
1,880,043 + PP_1687 0.30 +0.0
1,880,044 - PP_1687 0.31 +0.4
1,880,067 + PP_1687 0.38 +0.6
1,880,067 + PP_1687 0.38 -4.2
1,880,067 + PP_1687 0.38 +1.0
1,880,067 + PP_1687 0.38 -1.3
1,880,067 + PP_1687 0.38 -0.8
1,880,068 - PP_1687 0.39 +0.9
1,880,068 - PP_1687 0.39 +0.2
1,880,068 - PP_1687 0.39 -2.9
1,880,068 - PP_1687 0.39 +0.4
1,880,068 - PP_1687 0.39 +3.2

Or see this region's nucleotide sequence