Strain Fitness in Pseudomonas putida KT2440 around PP_1568

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
1,761,242	+		PP_1567	0.31	-0.2
1,761,251	+		PP_1567	0.32	-0.1
1,761,277	+		PP_1567	0.34	+0.8
1,761,479	+		PP_1567	0.50	+3.7
1,761,479	+		PP_1567	0.50	-1.0
1,761,555	+		PP_1567	0.56	-2.6
1,761,555	+		PP_1567	0.56	-0.7
1,761,555	+		PP_1567	0.56	-0.3
1,761,576	+		PP_1567	0.58	+0.2
1,761,588	+		PP_1567	0.59	+1.6
1,761,588	+		PP_1567	0.59	-1.8
1,761,588	+		PP_1567	0.59	-1.3
1,761,588	+		PP_1567	0.59	+2.0
1,761,707	+		PP_1567	0.69	+0.2
1,761,707	+		PP_1567	0.69	-1.2
1,761,747	+		PP_1567	0.72	+0.2
1,761,822	+		PP_1567	0.78	+0.2
1,761,822	+		PP_1567	0.78	-2.9
1,761,822	+		PP_1567	0.78	-1.0
1,761,823	-		PP_1567	0.78	-0.8
1,761,823	-		PP_1567	0.78	+0.1
1,761,854	-		PP_1567	0.80	+0.2
1,762,139	-				-0.7
1,762,191	-		PP_1568	0.23	+0.9
1,762,366	+				-1.2
1,762,366	+				+1.3
1,762,366	+				-1.1
1,762,366	+				-1.5
1,762,367	-				+0.3
1,762,367	-				-0.4
1,762,367	-				+0.2
1,762,367	-				-1.9
1,762,551	+		PP_1569	0.39	+2.6
1,762,658	+		PP_1569	0.61	-0.9
1,762,658	+		PP_1569	0.61	-0.2
1,762,659	-		PP_1569	0.61	+0.9
1,762,683	-		PP_1569	0.66	-0.7
1,762,696	+		PP_1569	0.69	-1.8
1,762,696	+		PP_1569	0.69	-0.2
1,763,057	+		PP_1570	0.63	-0.9
1,763,058	-		PP_1570	0.63	+0.3
1,763,095	+		PP_1570	0.74	-0.7
1,763,095	+		PP_1570	0.74	-0.4
1,763,096	-		PP_1570	0.74	-0.9
1,763,096	-		PP_1570	0.74	+0.2
1,763,153	+				-0.6
1,763,153	+				-2.7
1,763,154	-				-0.0
1,763,154	-				+0.8