Strain Fitness in Pseudomonas putida KT2440 around PP_1552

Experiment: pH 4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_1551 and PP_1552 are separated by 97 nucleotidesPP_1552 and PP_1553 are separated by 2 nucleotidesPP_1553 and PP_1554 overlap by 4 nucleotidesPP_1554 and PP_1555 are separated by 14 nucleotides PP_1551: PP_1551 - putative Phage replication protein O, at 1,750,642 to 1,751,496 _1551 PP_1552: PP_1552 - putative Phage replication protein, at 1,751,594 to 1,752,298 _1552 PP_1553: PP_1553 - conserved protein of unknown function, at 1,752,301 to 1,752,597 _1553 PP_1554: PP_1554 - conserved protein of unknown function, at 1,752,594 to 1,753,016 _1554 PP_1555: PP_1555 - putative Phage integrase, at 1,753,031 to 1,754,302 _1555 Position (kb) 1751 1752 1753Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1750.619 kb on - strandat 1750.626 kb on + strandat 1750.627 kb on - strandat 1750.627 kb on - strandat 1750.627 kb on - strandat 1750.756 kb on + strand, within PP_1551at 1750.756 kb on + strand, within PP_1551at 1750.757 kb on - strand, within PP_1551at 1750.948 kb on + strand, within PP_1551at 1750.949 kb on - strand, within PP_1551at 1751.044 kb on + strand, within PP_1551at 1751.049 kb on + strand, within PP_1551at 1751.049 kb on + strand, within PP_1551at 1751.049 kb on + strand, within PP_1551at 1751.065 kb on + strand, within PP_1551at 1751.065 kb on + strand, within PP_1551at 1751.065 kb on + strand, within PP_1551at 1751.066 kb on - strand, within PP_1551at 1751.069 kb on + strand, within PP_1551at 1751.069 kb on + strand, within PP_1551at 1751.069 kb on + strand, within PP_1551at 1751.069 kb on + strand, within PP_1551at 1751.070 kb on - strand, within PP_1551at 1751.091 kb on + strand, within PP_1551at 1751.091 kb on + strand, within PP_1551at 1751.091 kb on + strand, within PP_1551at 1751.091 kb on + strand, within PP_1551at 1751.092 kb on - strand, within PP_1551at 1751.092 kb on - strand, within PP_1551at 1751.092 kb on - strand, within PP_1551at 1751.092 kb on - strand, within PP_1551at 1751.092 kb on - strand, within PP_1551at 1751.092 kb on - strand, within PP_1551at 1751.212 kb on + strand, within PP_1551at 1751.486 kb on - strandat 1751.506 kb on + strandat 1751.506 kb on + strandat 1751.506 kb on + strandat 1751.506 kb on + strandat 1751.507 kb on - strandat 1751.507 kb on - strandat 1751.507 kb on - strandat 1751.509 kb on + strandat 1751.509 kb on + strandat 1751.509 kb on + strandat 1751.510 kb on - strandat 1751.510 kb on - strandat 1751.733 kb on + strand, within PP_1552at 1751.768 kb on + strand, within PP_1552at 1751.768 kb on + strand, within PP_1552at 1751.769 kb on - strand, within PP_1552at 1751.820 kb on - strand, within PP_1552at 1751.997 kb on - strand, within PP_1552at 1752.222 kb on - strand, within PP_1552at 1752.222 kb on - strand, within PP_1552at 1752.429 kb on - strand, within PP_1553at 1752.432 kb on + strand, within PP_1553at 1752.432 kb on + strand, within PP_1553at 1752.433 kb on - strand, within PP_1553at 1752.709 kb on - strand, within PP_1554at 1752.709 kb on - strand, within PP_1554at 1752.709 kb on - strand, within PP_1554at 1752.848 kb on - strand, within PP_1554at 1753.112 kb on + strandat 1753.190 kb on + strand, within PP_1555at 1753.190 kb on + strand, within PP_1555at 1753.190 kb on + strand, within PP_1555at 1753.191 kb on - strand, within PP_1555

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pH 4
remove
1,750,619 - +0.4
1,750,626 + -2.6
1,750,627 - -1.5
1,750,627 - +0.2
1,750,627 - +0.7
1,750,756 + PP_1551 0.13 +0.1
1,750,756 + PP_1551 0.13 +1.2
1,750,757 - PP_1551 0.13 -0.6
1,750,948 + PP_1551 0.36 -3.0
1,750,949 - PP_1551 0.36 +0.6
1,751,044 + PP_1551 0.47 -1.3
1,751,049 + PP_1551 0.48 +0.7
1,751,049 + PP_1551 0.48 +1.2
1,751,049 + PP_1551 0.48 +0.2
1,751,065 + PP_1551 0.49 +0.8
1,751,065 + PP_1551 0.49 -0.6
1,751,065 + PP_1551 0.49 +3.1
1,751,066 - PP_1551 0.50 -2.3
1,751,069 + PP_1551 0.50 +1.7
1,751,069 + PP_1551 0.50 -0.7
1,751,069 + PP_1551 0.50 -2.3
1,751,069 + PP_1551 0.50 -1.1
1,751,070 - PP_1551 0.50 +3.7
1,751,091 + PP_1551 0.53 -1.3
1,751,091 + PP_1551 0.53 +0.1
1,751,091 + PP_1551 0.53 +0.2
1,751,091 + PP_1551 0.53 +0.2
1,751,092 - PP_1551 0.53 +3.1
1,751,092 - PP_1551 0.53 +0.2
1,751,092 - PP_1551 0.53 +0.2
1,751,092 - PP_1551 0.53 -1.5
1,751,092 - PP_1551 0.53 -0.3
1,751,092 - PP_1551 0.53 +0.2
1,751,212 + PP_1551 0.67 -2.0
1,751,486 - -1.6
1,751,506 + +0.2
1,751,506 + +0.8
1,751,506 + -0.3
1,751,506 + -2.2
1,751,507 - -2.3
1,751,507 - -0.7
1,751,507 - +0.9
1,751,509 + -2.6
1,751,509 + +1.3
1,751,509 + -2.2
1,751,510 - -0.5
1,751,510 - -3.7
1,751,733 + PP_1552 0.20 +1.8
1,751,768 + PP_1552 0.25 -4.0
1,751,768 + PP_1552 0.25 -0.4
1,751,769 - PP_1552 0.25 +1.8
1,751,820 - PP_1552 0.32 +3.0
1,751,997 - PP_1552 0.57 +3.6
1,752,222 - PP_1552 0.89 +1.7
1,752,222 - PP_1552 0.89 +0.6
1,752,429 - PP_1553 0.43 +1.3
1,752,432 + PP_1553 0.44 -2.9
1,752,432 + PP_1553 0.44 +0.3
1,752,433 - PP_1553 0.44 -2.6
1,752,709 - PP_1554 0.27 +1.3
1,752,709 - PP_1554 0.27 +0.2
1,752,709 - PP_1554 0.27 -0.4
1,752,848 - PP_1554 0.60 -1.5
1,753,112 + +0.3
1,753,190 + PP_1555 0.12 -1.3
1,753,190 + PP_1555 0.12 +0.0
1,753,190 + PP_1555 0.12 +2.5
1,753,191 - PP_1555 0.13 +0.3

Or see this region's nucleotide sequence