Strain Fitness in Pseudomonas putida KT2440 around PP_1487

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
1,690,055	+		PP_1486	0.32	+0.4
1,690,178	+		PP_1486	0.43	-1.2
1,690,178	+		PP_1486	0.43	+0.3
1,690,178	+		PP_1486	0.43	+0.8
1,690,178	+		PP_1486	0.43	+0.1
1,690,178	+				+3.3
1,690,178	+		PP_1486	0.43	-1.3
1,690,179	-		PP_1486	0.43	+1.5
1,690,179	-		PP_1486	0.43	-0.3
1,690,179	-		PP_1486	0.43	-1.3
1,690,179	-		PP_1486	0.43	-0.3
1,690,242	-		PP_1486	0.49	+0.8
1,690,242	-		PP_1486	0.49	+1.7
1,690,262	+		PP_1486	0.50	+0.7
1,690,263	-		PP_1486	0.50	-1.0
1,690,263	-		PP_1486	0.50	-1.8
1,690,263	-		PP_1486	0.50	-0.1
1,690,263	-				+0.9
1,690,419	-		PP_1486	0.64	+0.4
1,690,439	+		PP_1486	0.66	-0.3
1,690,440	-		PP_1486	0.66	+0.2
1,690,440	-		PP_1486	0.66	+0.4
1,690,440	-		PP_1486	0.66	+1.6
1,690,446	+		PP_1486	0.66	-0.2
1,690,446	+		PP_1486	0.66	+0.7
1,690,446	+		PP_1486	0.66	+1.6
1,690,447	-		PP_1486	0.66	+1.9
1,690,510	+		PP_1486	0.72	+2.5
1,690,670	+		PP_1486	0.86	+1.3
1,690,670	+		PP_1486	0.86	+1.6
1,690,671	-		PP_1486	0.86	+2.9
1,690,671	-		PP_1486	0.86	-1.9
1,690,701	-		PP_1486	0.89	-0.2
1,690,899	+				-0.4
1,690,900	-				-0.3
1,690,902	-				-0.4
1,690,907	+				-0.4
1,690,908	-				+0.3
1,690,925	+				-0.5
1,690,943	+				+0.7
1,690,944	-				+1.4
1,690,944	-				-1.9
1,691,036	+				-0.6
1,691,036	+				+0.2
1,691,036	+				+1.6
1,691,037	-				+0.4
1,691,239	+		PP_1487	0.27	-0.1
1,691,285	+		PP_1487	0.34	+0.3
1,691,286	-		PP_1487	0.34	-0.9
1,691,286	-		PP_1487	0.34	+2.9
1,691,293	+		PP_1487	0.35	-1.0
1,691,295	+		PP_1487	0.36	-2.5
1,691,399	+		PP_1487	0.51	-0.6
1,691,440	-		PP_1487	0.57	-0.5
1,691,596	+		PP_1487	0.80	+0.3
1,691,596	+		PP_1487	0.80	+0.2
1,691,596	+		PP_1487	0.80	-0.7
1,691,597	-		PP_1487	0.80	-2.1
1,691,732	-				+2.6
1,691,754	+				-0.8
1,691,755	-				+1.9
1,691,755	-				-2.6
1,691,837	-				+0.9
1,691,837	-				-0.1
1,691,856	-				+0.2
1,691,857	+				+0.9
1,691,857	+				+0.9
1,691,857	+				+0.3
1,691,857	+				+0.4
1,691,857	+				+1.2
1,691,988	+				+1.5
1,691,989	-				+1.3
1,692,055	-				+0.2
1,692,055	-				-1.2
1,692,057	+				-0.3
1,692,057	+				+1.3
1,692,058	-				+0.2
1,692,058	-				-1.6
1,692,093	+		PP_1488	0.12	+0.2
1,692,093	+		PP_1488	0.12	-4.9
1,692,093	+		PP_1488	0.12	-3.9
1,692,093	+		PP_1488	0.12	-2.9
1,692,093	+		PP_1488	0.12	+1.1
1,692,094	-		PP_1488	0.12	+0.3
1,692,094	-		PP_1488	0.12	+0.3
1,692,094	-		PP_1488	0.12	+0.3
1,692,094	-		PP_1488	0.12	+0.2
1,692,094	-		PP_1488	0.12	+0.3
1,692,094	-		PP_1488	0.12	-0.9
1,692,192	+		PP_1488	0.18	-0.2
1,692,192	+		PP_1488	0.18	+0.6
1,692,192	+		PP_1488	0.18	+0.9
1,692,193	-		PP_1488	0.18	-2.5
1,692,193	-		PP_1488	0.18	-1.0
1,692,193	-		PP_1488	0.18	+0.0
1,692,193	-		PP_1488	0.18	+1.4
1,692,193	-		PP_1488	0.18	-2.0
1,692,204	+		PP_1488	0.18	-0.6
1,692,204	+		PP_1488	0.18	+0.8
1,692,273	+		PP_1488	0.23	+1.9
1,692,306	+		PP_1488	0.25	+0.8
1,692,322	-		PP_1488	0.26	-1.1
1,692,352	+		PP_1488	0.28	+0.5
1,692,353	-		PP_1488	0.28	+0.3
1,692,356	+		PP_1488	0.28	-1.3
1,692,356	+		PP_1488	0.28	-0.8
1,692,357	-		PP_1488	0.28	+0.7
1,692,357	-		PP_1488	0.28	+0.2
1,692,357	-		PP_1488	0.28	-0.0
1,692,357	-		PP_1488	0.28	-3.2
1,692,357	-		PP_1488	0.28	+0.3
1,692,407	+		PP_1488	0.31	-1.6
1,692,540	-		PP_1488	0.39	+1.6
1,692,561	-		PP_1488	0.40	+0.9