Experiment: pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_1184 and PP_1185 are separated by 123 nucleotides PP_1185 and PP_1186 are separated by 196 nucleotides PP_1186 and PP_1187 overlap by 4 nucleotides
PP_1184: PP_1184 - Dienelactone hydrolase family protein, at 1,359,214 to 1,360,011
_1184
PP_1185: PP_1185 - Outer membrane protein H1, at 1,360,135 to 1,360,740
_1185
PP_1186: PP_1186 - two component system DNA-binding transcriptional dual regulator, at 1,360,937 to 1,361,614
_1186
PP_1187: PP_1187 - sensor protein, at 1,361,611 to 1,362,957
_1187
Position (kb)
1360
1361 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1359.140 kb on - strand at 1359.215 kb on + strand at 1359.246 kb on + strand at 1359.246 kb on + strand at 1359.246 kb on + strand at 1359.247 kb on - strand at 1359.247 kb on - strand at 1359.247 kb on - strand at 1359.279 kb on + strand at 1359.280 kb on - strand at 1359.280 kb on - strand at 1359.281 kb on + strand at 1359.282 kb on - strand at 1359.363 kb on + strand, within PP_1184 at 1359.377 kb on + strand, within PP_1184 at 1359.378 kb on - strand, within PP_1184 at 1359.378 kb on - strand, within PP_1184 at 1359.408 kb on + strand, within PP_1184 at 1359.409 kb on - strand, within PP_1184 at 1359.752 kb on + strand, within PP_1184 at 1359.752 kb on + strand, within PP_1184 at 1359.753 kb on - strand, within PP_1184 at 1359.753 kb on - strand, within PP_1184 at 1359.753 kb on - strand, within PP_1184 at 1359.753 kb on - strand, within PP_1184 at 1359.753 kb on - strand, within PP_1184 at 1359.885 kb on - strand, within PP_1184 at 1359.885 kb on - strand, within PP_1184 at 1359.890 kb on + strand at 1359.947 kb on - strand at 1360.086 kb on + strand at 1360.086 kb on + strand at 1360.087 kb on - strand at 1360.091 kb on + strand at 1360.092 kb on - strand at 1360.092 kb on - strand at 1360.127 kb on - strand at 1360.231 kb on + strand, within PP_1185 at 1360.231 kb on + strand, within PP_1185 at 1360.232 kb on - strand, within PP_1185 at 1360.304 kb on + strand, within PP_1185 at 1360.306 kb on - strand, within PP_1185 at 1360.306 kb on - strand, within PP_1185 at 1360.324 kb on - strand, within PP_1185 at 1360.369 kb on + strand, within PP_1185 at 1360.369 kb on + strand, within PP_1185 at 1360.369 kb on + strand, within PP_1185 at 1360.378 kb on + strand, within PP_1185 at 1360.378 kb on + strand, within PP_1185 at 1360.378 kb on + strand, within PP_1185 at 1360.379 kb on - strand, within PP_1185 at 1360.379 kb on - strand, within PP_1185 at 1360.379 kb on - strand, within PP_1185 at 1360.379 kb on - strand at 1360.467 kb on + strand, within PP_1185 at 1360.550 kb on - strand, within PP_1185 at 1360.562 kb on - strand, within PP_1185 at 1360.621 kb on + strand, within PP_1185 at 1360.628 kb on - strand, within PP_1185 at 1360.714 kb on + strand at 1360.714 kb on + strand at 1360.729 kb on + strand at 1360.729 kb on + strand at 1360.730 kb on - strand at 1360.730 kb on - strand at 1360.762 kb on + strand at 1360.848 kb on + strand at 1360.848 kb on + strand at 1360.849 kb on - strand at 1360.849 kb on - strand at 1360.874 kb on + strand at 1360.875 kb on - strand at 1360.918 kb on + strand at 1360.918 kb on + strand at 1360.918 kb on + strand at 1360.918 kb on + strand at 1360.918 kb on + strand at 1360.918 kb on + strand at 1360.918 kb on + strand at 1360.919 kb on - strand at 1360.919 kb on - strand at 1360.924 kb on + strand at 1360.924 kb on + strand at 1360.924 kb on + strand at 1360.925 kb on - strand at 1360.925 kb on - strand at 1360.925 kb on - strand at 1360.925 kb on - strand at 1360.986 kb on - strand at 1361.228 kb on + strand, within PP_1186 at 1361.229 kb on - strand, within PP_1186 at 1361.414 kb on + strand, within PP_1186 at 1361.414 kb on + strand, within PP_1186 at 1361.415 kb on - strand, within PP_1186 at 1361.472 kb on - strand at 1361.588 kb on + strand at 1361.589 kb on - strand at 1361.589 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH 4 remove 1,359,140 - +2.8 1,359,215 + +0.4 1,359,246 + +1.9 1,359,246 + +1.2 1,359,246 + +1.7 1,359,247 - +0.4 1,359,247 - +0.8 1,359,247 - +1.0 1,359,279 + +0.4 1,359,280 - -1.6 1,359,280 - +0.5 1,359,281 + -1.6 1,359,282 - -0.5 1,359,363 + PP_1184 0.19 +0.1 1,359,377 + PP_1184 0.20 -0.8 1,359,378 - PP_1184 0.21 +0.9 1,359,378 - PP_1184 0.21 -0.3 1,359,408 + PP_1184 0.24 +0.4 1,359,409 - PP_1184 0.24 +1.4 1,359,752 + PP_1184 0.67 +0.4 1,359,752 + PP_1184 0.67 +3.5 1,359,753 - PP_1184 0.68 +0.6 1,359,753 - PP_1184 0.68 -1.2 1,359,753 - PP_1184 0.68 -0.2 1,359,753 - PP_1184 0.68 +0.1 1,359,753 - PP_1184 0.68 +1.4 1,359,885 - PP_1184 0.84 -0.1 1,359,885 - PP_1184 0.84 -0.7 1,359,890 + +0.4 1,359,947 - +0.4 1,360,086 + -1.8 1,360,086 + -0.5 1,360,087 - +0.4 1,360,091 + -0.7 1,360,092 - +0.4 1,360,092 - -3.6 1,360,127 - -1.6 1,360,231 + PP_1185 0.16 -0.6 1,360,231 + PP_1185 0.16 +1.1 1,360,232 - PP_1185 0.16 +0.4 1,360,304 + PP_1185 0.28 -1.6 1,360,306 - PP_1185 0.28 +0.4 1,360,306 - PP_1185 0.28 -1.2 1,360,324 - PP_1185 0.31 +0.4 1,360,369 + PP_1185 0.39 -0.9 1,360,369 + PP_1185 0.39 -2.8 1,360,369 + PP_1185 0.39 -2.7 1,360,378 + PP_1185 0.40 -3.4 1,360,378 + PP_1185 0.40 +0.4 1,360,378 + PP_1185 0.40 -3.5 1,360,379 - PP_1185 0.40 +0.4 1,360,379 - PP_1185 0.40 -1.6 1,360,379 - PP_1185 0.40 +0.4 1,360,379 - +0.4 1,360,467 + PP_1185 0.55 -2.8 1,360,550 - PP_1185 0.68 +0.4 1,360,562 - PP_1185 0.70 +1.4 1,360,621 + PP_1185 0.80 +0.4 1,360,628 - PP_1185 0.81 -2.0 1,360,714 + -1.6 1,360,714 + -1.6 1,360,729 + +0.4 1,360,729 + -1.2 1,360,730 - -2.0 1,360,730 - +0.4 1,360,762 + -0.6 1,360,848 + +0.8 1,360,848 + -0.4 1,360,849 - +0.4 1,360,849 - +0.4 1,360,874 + -2.7 1,360,875 - +1.9 1,360,918 + +1.0 1,360,918 + +0.1 1,360,918 + +0.8 1,360,918 + -3.0 1,360,918 + +0.6 1,360,918 + -2.2 1,360,918 + +0.1 1,360,919 - -4.0 1,360,919 - +0.4 1,360,924 + -0.9 1,360,924 + -1.0 1,360,924 + +0.1 1,360,925 - +0.4 1,360,925 - -2.2 1,360,925 - +0.4 1,360,925 - +0.4 1,360,986 - -1.2 1,361,228 + PP_1186 0.43 +0.4 1,361,229 - PP_1186 0.43 +0.4 1,361,414 + PP_1186 0.70 -2.0 1,361,414 + PP_1186 0.70 -1.6 1,361,415 - PP_1186 0.71 +0.4 1,361,472 - +0.4 1,361,588 + -2.5 1,361,589 - +0.4 1,361,589 - +0.4
Or see this region's nucleotide sequence