Strain Fitness in Pseudomonas putida KT2440 around PP_1106

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
1,263,410	-		PP_1105	0.40	+2.1
1,263,838	+		PP_1105	0.66	+0.3
1,263,838	+		PP_1105	0.66	-0.5
1,263,839	-		PP_1105	0.66	-1.2
1,263,864	+		PP_1105	0.67	+2.4
1,263,864	+		PP_1105	0.67	+0.4
1,263,864	+		PP_1105	0.67	+0.4
1,263,864	+		PP_1105	0.67	-1.0
1,263,865	-		PP_1105	0.67	-0.4
1,263,865	-		PP_1105	0.67	-0.3
1,263,865	-		PP_1105	0.67	+0.4
1,263,865	-		PP_1105	0.67	+0.1
1,263,865	-		PP_1105	0.67	-2.5
1,263,865	-		PP_1105	0.67	+1.5
1,263,874	+		PP_1105	0.68	-0.0
1,263,993	+		PP_1105	0.75	+0.4
1,263,993	+		PP_1105	0.75	-0.9
1,263,994	-		PP_1105	0.75	+1.7
1,263,994	-		PP_1105	0.75	-0.2
1,264,181	-		PP_1105	0.86	-0.9
1,264,181	-		PP_1105	0.86	+0.7
1,264,236	+		PP_1105	0.90	-0.8
1,264,237	-		PP_1105	0.90	-0.4
1,264,237	-		PP_1105	0.90	+0.5
1,264,328	-				-0.9
1,264,391	+				+2.0
1,264,392	-				-0.8
1,264,446	+				+0.1
1,264,492	-				+0.9
1,264,492	-				-2.4
1,264,502	+				+0.4
1,264,502	+				-0.9
1,264,502	+				-0.4
1,264,503	-				+2.7
1,264,672	-		PP_1106	0.26	-1.3
1,264,697	-		PP_1106	0.29	-0.1
1,264,697	-		PP_1106	0.29	+0.3
1,264,763	-		PP_1106	0.35	+0.6
1,264,905	+		PP_1106	0.49	-0.7
1,264,905	+		PP_1106	0.49	-2.1
1,264,906	-		PP_1106	0.49	-3.2
1,265,062	+		PP_1106	0.65	-1.8
1,265,062	+		PP_1106	0.65	+3.2
1,265,063	-		PP_1106	0.65	-0.7
1,265,081	+		PP_1106	0.67	+0.4
1,265,081	+		PP_1106	0.67	+0.5
1,265,088	+		PP_1106	0.67	+0.1
1,265,088	+		PP_1106	0.67	-0.0
1,265,089	-		PP_1106	0.67	-1.5
1,265,089	-		PP_1106	0.67	-0.4
1,265,089	-		PP_1106	0.67	-1.8
1,265,209	-		PP_1106	0.79	-0.2
1,265,283	+		PP_1106	0.87	-1.5
1,265,284	-		PP_1106	0.87	-0.6
1,265,365	-				+2.4
1,265,385	+				-0.4
1,265,385	+				+1.6
1,265,472	+				+0.3
1,265,566	+				-0.7
1,265,566	+				-1.4
1,265,583	+				+0.6
1,265,584	-				+0.3
1,265,661	+				-1.3
1,265,705	+				+0.1
1,265,705	+				+0.1
1,265,868	+		PP_1108	0.13	-1.7
1,265,869	-		PP_1108	0.13	+1.3