Strain Fitness in Pseudomonas putida KT2440 around PP_1015

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
1,156,926	+		PP_1014	0.33	+0.2
1,156,926	+		PP_1014	0.33	-1.3
1,156,926	+		PP_1014	0.33	-2.5
1,156,927	-		PP_1014	0.33	+0.4
1,156,927	-		PP_1014	0.33	-0.0
1,156,927	-		PP_1014	0.33	-0.6
1,156,927	-		PP_1014	0.33	+3.0
1,156,927	-		PP_1014	0.33	-2.0
1,157,148	+		PP_1014	0.51	-0.5
1,157,218	+		PP_1014	0.56	-0.5
1,157,218	+		PP_1014	0.56	-3.4
1,157,219	-		PP_1014	0.56	+0.4
1,157,219	-		PP_1014	0.56	-2.9
1,157,254	+		PP_1014	0.59	-1.0
1,157,255	-		PP_1014	0.59	-0.4
1,157,262	+		PP_1014	0.60	-1.8
1,157,262	+		PP_1014	0.60	-1.9
1,157,263	+		PP_1014	0.60	-1.5
1,157,263	-		PP_1014	0.60	+1.3
1,157,263	-		PP_1014	0.60	-1.4
1,157,336	-		PP_1014	0.66	+1.4
1,157,428	+		PP_1014	0.73	-0.6
1,157,431	-		PP_1014	0.73	-2.0
1,157,431	-		PP_1014	0.73	+0.1
1,157,431	-		PP_1014	0.73	+0.0
1,157,431	-		PP_1014	0.73	+0.4
1,157,431	-		PP_1014	0.73	-2.4
1,157,431	-		PP_1014	0.73	-4.3
1,157,675	-				+0.6
1,157,750	+				-2.3
1,157,751	-				-2.0
1,157,751	-				-3.3
1,157,808	+				-0.6
1,157,809	-				-2.6
1,157,809	-				+0.4
1,157,821	-				-4.0
1,157,821	-				-2.4
1,157,821	-				-2.2
1,157,846	+				-2.7
1,157,846	+				-3.7
1,157,846	+				-4.8
1,157,847	-				-3.5
1,157,847	-				-1.6
1,157,847	-				+0.4
1,158,264	+		PP_1015	0.31	-1.1
1,158,264	+		PP_1015	0.31	-2.8
1,158,264	+		PP_1015	0.31	-5.5
1,158,265	-		PP_1015	0.31	-5.8
1,158,276	+		PP_1015	0.32	-4.8
1,158,276	+		PP_1015	0.32	-1.6
1,158,277	-		PP_1015	0.32	+1.0
1,158,277	-		PP_1015	0.32	-3.3
1,158,277	-		PP_1015	0.32	-3.1
1,158,504	+		PP_1015	0.49	-2.2
1,158,504	+		PP_1015	0.49	-2.7
1,158,594	+		PP_1015	0.56	-4.1
1,158,595	-		PP_1015	0.56	-4.2
1,158,595	-		PP_1015	0.56	-0.8
1,158,595	-		PP_1015	0.56	-2.6
1,158,595	-		PP_1015	0.56	-1.6
1,158,774	+		PP_1015	0.70	-4.3
1,158,939	+		PP_1015	0.83	+0.4
1,158,939	+		PP_1015	0.83	-2.9
1,158,940	-		PP_1015	0.83	+0.7
1,159,080	+				-4.1
1,159,080	+				-3.6
1,159,080	+				+0.4
1,159,080	+				-3.6
1,159,081	-				-4.1
1,159,081	-				-3.1
1,159,081	-				-1.9
1,159,258	+				+1.2
1,159,258	+				-1.9
1,159,285	+				-3.6
1,159,285	+				-3.5
1,159,286	-				-3.5
1,159,396	+		PP_1016	0.12	-3.1
1,159,396	+		PP_1016	0.12	-4.3
1,159,396	+		PP_1016	0.12	-4.4
1,159,397	-		PP_1016	0.12	-3.7
1,159,402	+		PP_1016	0.13	-3.3
1,159,456	+		PP_1016	0.18	+0.4
1,159,456	+		PP_1016	0.18	-3.4
1,159,457	-		PP_1016	0.19	-3.1
1,159,457	-		PP_1016	0.19	-3.4
1,159,457	-		PP_1016	0.19	-1.6
1,159,480	+		PP_1016	0.21	-2.6
1,159,480	+		PP_1016	0.21	-3.1
1,159,636	+		PP_1016	0.38	-3.8
1,159,636	+		PP_1016	0.38	-3.5
1,159,636	+		PP_1016	0.38	-3.9
1,159,637	-		PP_1016	0.38	-1.2
1,159,642	+		PP_1016	0.39	-2.4
1,159,786	+		PP_1016	0.55	-2.4
1,159,786	+		PP_1016	0.55	-2.5
1,159,787	-		PP_1016	0.55	+0.1
1,159,787	-		PP_1016	0.55	-4.5
1,159,918	+		PP_1016	0.69	+0.4
1,159,919	-		PP_1016	0.69	-4.1
1,160,068	+		PP_1016	0.86	-1.6
1,160,068	+		PP_1016	0.86	-1.6
1,160,068	+		PP_1016	0.86	-1.2
1,160,069	-		PP_1016	0.86	-3.4
1,160,069	-		PP_1016	0.86	+0.4
1,160,069	-		PP_1016	0.86	-2.2