Strain Fitness in Pseudomonas putida KT2440 around PP_1014

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
1,155,668	-		PP_1013	0.57	+0.4
1,155,677	+		PP_1013	0.57	-4.4
1,155,890	-		PP_1013	0.72	+0.4
1,155,921	-		PP_1013	0.74	-1.2
1,155,969	-		PP_1013	0.77	-2.5
1,156,032	-		PP_1013	0.82	+0.0
1,156,176	-				+0.1
1,156,214	-				+0.4
1,156,275	-				-3.5
1,156,289	-				-2.1
1,156,345	-				-1.5
1,156,372	-				-0.5
1,156,531	+				+0.4
1,156,531	+				+0.8
1,156,531	+				+0.4
1,156,532	-				-2.8
1,156,756	+		PP_1014	0.19	-0.2
1,156,756	+		PP_1014	0.19	-4.0
1,156,862	-		PP_1014	0.28	+1.5
1,156,862	-		PP_1014	0.28	-1.2
1,156,926	+		PP_1014	0.33	+0.2
1,156,926	+		PP_1014	0.33	-1.3
1,156,926	+		PP_1014	0.33	-2.5
1,156,927	-		PP_1014	0.33	+0.4
1,156,927	-		PP_1014	0.33	-0.0
1,156,927	-		PP_1014	0.33	-0.6
1,156,927	-		PP_1014	0.33	+3.0
1,156,927	-		PP_1014	0.33	-2.0
1,157,148	+		PP_1014	0.51	-0.5
1,157,218	+		PP_1014	0.56	-0.5
1,157,218	+		PP_1014	0.56	-3.4
1,157,219	-		PP_1014	0.56	+0.4
1,157,219	-		PP_1014	0.56	-2.9
1,157,254	+		PP_1014	0.59	-1.0
1,157,255	-		PP_1014	0.59	-0.4
1,157,262	+		PP_1014	0.60	-1.8
1,157,262	+		PP_1014	0.60	-1.9
1,157,263	+		PP_1014	0.60	-1.5
1,157,263	-		PP_1014	0.60	+1.3
1,157,263	-		PP_1014	0.60	-1.4
1,157,336	-		PP_1014	0.66	+1.4
1,157,428	+		PP_1014	0.73	-0.6
1,157,431	-		PP_1014	0.73	-2.0
1,157,431	-		PP_1014	0.73	+0.1
1,157,431	-		PP_1014	0.73	+0.0
1,157,431	-		PP_1014	0.73	+0.4
1,157,431	-		PP_1014	0.73	-2.4
1,157,431	-		PP_1014	0.73	-4.3
1,157,675	-				+0.6
1,157,750	+				-2.3
1,157,751	-				-2.0
1,157,751	-				-3.3
1,157,808	+				-0.6
1,157,809	-				-2.6
1,157,809	-				+0.4
1,157,821	-				-4.0
1,157,821	-				-2.4
1,157,821	-				-2.2
1,157,846	+				-2.7
1,157,846	+				-3.7
1,157,846	+				-4.8
1,157,847	-				-3.5
1,157,847	-				-1.6
1,157,847	-				+0.4
1,158,264	+		PP_1015	0.31	-1.1
1,158,264	+		PP_1015	0.31	-2.8
1,158,264	+		PP_1015	0.31	-5.5
1,158,265	-		PP_1015	0.31	-5.8
1,158,276	+		PP_1015	0.32	-4.8
1,158,276	+		PP_1015	0.32	-1.6
1,158,277	-		PP_1015	0.32	+1.0
1,158,277	-		PP_1015	0.32	-3.3
1,158,277	-		PP_1015	0.32	-3.1
1,158,504	+		PP_1015	0.49	-2.2
1,158,504	+		PP_1015	0.49	-2.7
1,158,594	+		PP_1015	0.56	-4.1
1,158,595	-		PP_1015	0.56	-4.2
1,158,595	-		PP_1015	0.56	-0.8
1,158,595	-		PP_1015	0.56	-2.6
1,158,595	-		PP_1015	0.56	-1.6