Strain Fitness in Pseudomonas putida KT2440 around PP_1003

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
1,141,877	-		PP_1002	0.61	-0.7
1,142,042	+		PP_1002	0.73	+1.1
1,142,086	-		PP_1002	0.76	-0.1
1,142,086	-		PP_1002	0.76	-0.8
1,142,176	-		PP_1002	0.82	-3.4
1,142,176	-		PP_1002	0.82	-0.0
1,142,176	-		PP_1002	0.82	+0.4
1,142,176	-		PP_1002	0.82	-2.8
1,142,200	-		PP_1002	0.84	+0.1
1,142,200	-		PP_1002	0.84	+1.7
1,142,200	-		PP_1002	0.84	-0.7
1,142,205	+		PP_1002	0.84	-0.3
1,142,205	+		PP_1002	0.84	-0.5
1,142,205	+		PP_1002	0.84	+2.4
1,142,205	+		PP_1002	0.84	+1.2
1,142,206	-		PP_1002	0.84	-0.2
1,142,354	-				-3.8
1,142,391	-				-0.9
1,142,430	+				-0.9
1,142,430	+				+0.4
1,142,431	-				-2.6
1,142,466	-				-0.2
1,142,466	-				+0.4
1,142,495	+				+2.7
1,142,495	+				+0.4
1,142,583	+				-1.2
1,142,584	-				-0.8
1,142,606	-				+0.5
1,142,644	-				+0.2
1,142,644	-				+0.3
1,142,746	+				-1.1
1,142,771	-				+0.8
1,142,789	+				+0.1
1,142,790	-				+1.2
1,142,794	+				+0.6
1,142,795	-				-0.6
1,142,810	+				+1.8
1,142,810	+				-2.4
1,142,810	+				-3.4
1,142,810	+				+1.2
1,143,085	+		PP_1003	0.15	+1.4
1,143,086	-		PP_1003	0.15	+1.6
1,143,087	+		PP_1003	0.16	+2.5
1,143,087	+		PP_1003	0.16	+1.5
1,143,087	+		PP_1003	0.16	+0.4
1,143,087	+		PP_1003	0.16	-1.3
1,143,087	+		PP_1003	0.16	+0.8
1,143,088	-		PP_1003	0.16	+0.8
1,143,088	-		PP_1003	0.16	-1.5
1,143,088	-		PP_1003	0.16	+0.4
1,143,088	-		PP_1003	0.16	+0.8
1,143,088	-		PP_1003	0.16	+1.3
1,143,093	+		PP_1003	0.16	-1.8
1,143,094	-		PP_1003	0.16	+0.0
1,143,094	-		PP_1003	0.16	+0.6
1,143,094	-		PP_1003	0.16	+0.1
1,143,117	+		PP_1003	0.18	-1.0
1,143,117	+		PP_1003	0.18	+0.9
1,143,117	+		PP_1003	0.18	-1.1
1,143,118	-		PP_1003	0.18	+1.1
1,143,211	-		PP_1003	0.24	-0.5
1,143,211	-		PP_1003	0.24	+1.3
1,143,211	-		PP_1003	0.24	+0.4
1,143,281	-		PP_1003	0.29	-0.5
1,143,905	+		PP_1003	0.73	-1.2
1,143,906	-		PP_1003	0.73	-0.3
1,143,923	+		PP_1003	0.74	+0.3
1,143,927	+		PP_1003	0.74	+0.1
1,143,927	+		PP_1003	0.74	-2.5
1,143,927	+		PP_1003	0.74	+1.1
1,143,927	+		PP_1003	0.74	+1.3
1,143,928	-		PP_1003	0.74	-1.5
1,143,928	-		PP_1003	0.74	+1.3
1,143,972	+		PP_1003	0.78	-0.1
1,143,973	-		PP_1003	0.78	+0.4
1,143,973	-		PP_1003	0.78	-1.0
1,143,991	-		PP_1003	0.79	-1.0
1,144,084	-		PP_1003	0.85	+0.9
1,144,101	+		PP_1003	0.87	+0.8
1,144,101	+		PP_1003	0.87	+1.0
1,144,102	-		PP_1003	0.87	-0.4
1,144,143	+		PP_1003	0.89	+0.5
1,144,144	-		PP_1003	0.90	-0.1
1,144,260	+				+2.3
1,144,261	-				+3.0
1,144,269	+				-0.7
1,144,478	+		PP_1004	0.50	+2.7
1,144,479	-		PP_1004	0.50	+1.7
1,144,630	+		PP_1004	0.86	+1.1
1,144,631	-		PP_1004	0.87	-0.0
1,144,631	-		PP_1004	0.87	+0.4
1,144,677	+				+0.2
1,144,698	+				-1.7
1,144,698	+				-0.8
1,144,698	+				-2.2
1,144,699	-				-0.0
1,144,699	-				-0.6
1,144,699	-				-0.6
1,144,765	+				+0.4
1,145,190	+		PP_1005	0.76	-1.8
1,145,190	+		PP_1005	0.76	+0.3
1,145,191	-		PP_1005	0.76	-0.9
1,145,191	-		PP_1005	0.76	-0.3
1,145,191	-		PP_1005	0.76	-1.2
1,145,191	-		PP_1005	0.76	+0.7
1,145,191	-		PP_1005	0.76	-1.3
1,145,194	+		PP_1005	0.76	-2.9
1,145,195	-		PP_1005	0.77	+0.3
1,145,195	-		PP_1005	0.77	-1.2